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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037001 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase 39 kDa (CG6020):

Annotation Number : CG6020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037001
Gbrowse : chr3L:20485181-20490188 (+) // 100.0 //
Probeset : 1633965_at
Accessions : protein= NP_649234;, nucleotide= NM_140977;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0037001.
BDGP gene expression has embryonic in situ data for CG6020: 10 pix of staining in 15 body parts.
BioGrid reports that CG6020 interacts with CG7143 .
VDRC has 3 RNAi stocks for FBgn0037001 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1138 ± 234 of 4 1.30Up
Head1146 ± 344 of 4 1.30Up
Eye1355 ± 334 of 4 1.58Up
Thoracicoabdominal ganglion1679 ± 744 of 4 2.00Up
Salivary gland1238 ± 284 of 4 1.44Up
Crop1229 ± 214 of 4 1.40Up
Midgut673 ± 154 of 4 0.80Down
Tubule1088 ± 404 of 4 1.30Up
Hindgut1560 ± 524 of 4 1.80Up
Heart1304 ± 424 of 4 1.52Up
Fat body998 ± 1464 of 4 1.16None
Ovary359 ± 44 of 4 0.40Down
Testis445 ± 134 of 4 0.50Down
Male accessory glands941 ± 104 of 4 1.10None
Virgin spermatheca1321 ± 324 of 4 1.54Up
Mated spermatheca1092 ± 1054 of 4 1.27None
Adult carcass2422 ± 1844 of 4 2.80Up
Larval CNS460 ± 624 of 4 0.54Down
Larval Salivary gland710 ± 894 of 4 0.83None
Larval midgut703 ± 184 of 4 0.82Down
Larval tubule705 ± 964 of 4 0.80None
Larval hindgut1213 ± 514 of 4 1.42Up
Larval fat body364 ± 74 of 4 0.40Down
Larval trachea563 ± 254 of 4 0.66Down
Larval carcass1223 ± 1054 of 4 1.43Up
S2 cells (growing)734 ± 254 of 4 0.86Down
Whole fly857 ± 364 of 4

Looking for FBgn0037001. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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