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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037005 through 18771 annotations produced 1 hits



(CG5078):

Annotation Number : CG5078
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037005
Gbrowse : chr3L:20499257-20500475 (+) // 100.0 //
Probeset : 1629112_at
Accessions : protein= NP_649238;, nucleotide= NM_140981;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037005.
BioGrid reports that CG5078 interacts with CG7264 CG8159 CG8562 .
VDRC has 2 RNAi stocks for FBgn0037005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.60None
Head5 20 of 4 1.10None
Eye1 00 of 4 0.38None
Thoracicoabdominal ganglion5 10 of 4 1.10None
Salivary gland8 20 of 4 1.83None
Crop2 10 of 4 0.50None
Midgut2 10 of 4 0.40None
Tubule3 00 of 4 0.60Down
Hindgut5 10 of 4 1.10None
Heart2 10 of 4 0.58None
Fat body5 30 of 4 1.18None
Ovary1 10 of 4 0.40None
Testis1 00 of 4 0.40None
Male accessory glands132 294 of 427.90Up
Virgin spermatheca3 10 of 4 0.79None
Mated spermatheca3 10 of 4 0.72None
Adult carcass7 40 of 4 1.50None
Larval CNS2 10 of 4 0.56None
Larval Salivary gland4 10 of 4 0.83None
Larval midgut4 10 of 4 0.99None
Larval tubule4 10 of 4 0.90None
Larval hindgut1 00 of 4 0.29None
Larval fat body1 00 of 4 0.40None
Larval trachea2 10 of 4 0.48None
Larval carcass3 00 of 4 0.71None
S2 cells (growing)1 00 of 4 0.35None
Whole fly4 10 of 4

Looking for FBgn0037005. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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