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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: 16/4/2014: We have just migrated to a new server (the old one ran XP!).
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037007 through 18771 annotations produced 1 hits



(CG5059):

Annotation Number : CG5059
Flybase ID : FBgn0037007
Gbrowse : chr3L:20507695-20512532 (-) // 100.0 //
Probeset : 1630348_a_at
Accessions : protein= NP_649239; /// NP_730551; /// NP_730552; /// NP_996125;, nucleotide= NM_140982; /// NM_168864; /// NM_168865; /// NM_206403;
Pathway : 0005740 // mitochondrial envelope // inferred from electronic annotation /// 0016021 // integral to membrane // inferred
FlyMine data for FBgn0037007.
BDGP gene expression has embryonic in situ data for CG5059: 31 pix of staining in 20 body parts.
TRiP has 1 RNAi stocks for FBgn0037007 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037007 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain386 224 of 4 0.90None
Head761 474 of 4 1.80Up
Eye419 184 of 4 0.97None
Thoracicoabdominal ganglion340 224 of 4 0.80None
Salivary gland402 324 of 4 0.94None
Crop782 394 of 4 1.80Up
Midgut960 494 of 4 2.20Up
Tubule890 484 of 4 2.10Up
Hindgut826 604 of 4 1.90Up
Heart951 514 of 4 2.21Up
Fat body1746 2124 of 4 4.06Up
Ovary166 14 of 4 0.40Down
Testis76 24 of 4 0.20Down
Male accessory glands688 274 of 4 1.60Up
Virgin spermatheca1811 1594 of 4 4.21Up
Mated spermatheca1826 1604 of 4 4.24Up
Adult carcass721 394 of 4 1.70Up
Larval CNS553 904 of 4 1.29None
Larval Salivary gland443 404 of 4 1.03None
Larval midgut1687 2724 of 4 3.92Up
Larval tubule3160 1074 of 4 7.30Up
Larval hindgut1528 2144 of 4 3.55Up
Larval fat body2789 1214 of 4 6.50Up
Larval trachea434 1104 of 4 1.01None
Larval carcass773 2234 of 4 1.80None
S2 cells (growing)396 194 of 4 0.92None
Whole fly430 654 of 4

Looking for FBgn0037007. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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