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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037012 through 18771 annotations produced 1 hits



Reduction in Cnn Dots 2 (Rcd2):

Annotation Number : CG4786
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037012
Gbrowse : chr3L:20521071-20533514 (-) // 99.82 //
Probeset : 1624503_at
Accessions : protein= NP_649244;, nucleotide= NM_140987;
FlyMine data for FBgn0037012.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 14 of 4 0.60Down
Head90 ± 64 of 4 0.80Down
Eye103 ± 114 of 4 0.90None
Thoracicoabdominal ganglion62 ± 44 of 4 0.50Down
Salivary gland535 ± 234 of 4 4.68Up
Crop499 ± 244 of 4 4.40Up
Midgut627 ± 204 of 4 5.50Up
Tubule222 ± 444 of 4 1.90Up
Hindgut706 ± 264 of 4 6.20Up
Heart183 ± 154 of 4 1.60Up
Fat body33 ± 44 of 4 0.30Down
Ovary62 ± 64 of 4 0.50Down
Testis102 ± 34 of 4 0.90None
Male accessory glands187 ± 124 of 4 1.60Up
Virgin spermatheca217 ± 154 of 4 1.90Up
Mated spermatheca229 ± 134 of 4 2.01Up
Adult carcass49 ± 24 of 4 0.40Down
Larval CNS37 ± 34 of 4 0.32Down
Larval Salivary gland9 ± 13 of 4 0.08Down
Larval midgut387 ± 414 of 4 3.39Up
Larval tubule284 ± 284 of 4 2.50Up
Larval hindgut353 ± 344 of 4 3.09Up
Larval fat body11 ± 31 of 4 0.10Down
Larval trachea53 ± 144 of 4 0.47Down
Larval carcass119 ± 104 of 4 1.04None
S2 cells (growing)77 ± 24 of 4 0.68Down
Whole fly114 ± 34 of 4

Looking for FBgn0037012. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime