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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037016 through 18771 annotations produced 1 hits



(CG13252):

Annotation Number : CG13252
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037016
Gbrowse : chr3L:20723691-20737629 (+) // 100.0 //
Probeset : 1629062_at
Accessions : protein= NP_649248;, nucleotide= NM_140991;
FlyMine data for FBgn0037016.
BDGP gene expression has embryonic in situ data for CG13252: 12 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0037016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain180 144 of 4 1.00None
Head154 154 of 4 0.80None
Eye100 44 of 4 0.54Down
Thoracicoabdominal ganglion140 24 of 4 0.80None
Salivary gland139 44 of 4 0.75None
Crop306 174 of 4 1.70Up
Midgut307 174 of 4 1.70Up
Tubule1645 954 of 4 8.90Up
Hindgut605 164 of 4 3.30Up
Heart108 94 of 4 0.58Down
Fat body107 354 of 4 0.58Down
Ovary123 114 of 4 0.70Down
Testis112 104 of 4 0.60Down
Male accessory glands153 104 of 4 0.80None
Virgin spermatheca133 74 of 4 0.72None
Mated spermatheca151 104 of 4 0.81None
Adult carcass106 84 of 4 0.60Down
Larval CNS268 44 of 4 1.44Up
Larval Salivary gland636 664 of 4 3.43Up
Larval midgut912 594 of 4 4.91Up
Larval tubule3594 1514 of 419.40Up
Larval hindgut1211 74 of 4 6.52Up
Larval fat body313 254 of 4 1.70Up
Larval trachea129 64 of 4 0.70Down
Larval carcass382 474 of 4 2.06Up
S2 cells (growing)95 14 of 4 0.51Down
Whole fly185 174 of 4

Looking for FBgn0037016. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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