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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037017 through 18771 annotations produced 1 hits



(CG4074):

Annotation Number : CG4074
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037017
Gbrowse : chr3L:20761506-20762458 (-) // 100.0 //
Probeset : 1625800_at
Accessions : protein= NP_649249;, nucleotide= NM_140992;
Pathway : 0030904 // retromer complex // inferred from electronic annotation
FlyMine data for FBgn0037017.
VDRC has 4 RNAi stocks for FBgn0037017 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain80 ± 04 of 4 2.00Up
Head63 ± 14 of 4 1.60Up
Eye91 ± 64 of 4 2.29Up
Thoracicoabdominal ganglion73 ± 14 of 4 1.80Up
Salivary gland57 ± 34 of 4 1.44Up
Crop44 ± 24 of 4 1.10None
Midgut20 ± 24 of 4 0.50Down
Tubule30 ± 24 of 4 0.80Down
Hindgut36 ± 24 of 4 0.90None
Heart38 ± 34 of 4 0.95None
Fat body39 ± 114 of 4 0.98None
Ovary92 ± 14 of 4 2.30Up
Testis21 ± 24 of 4 0.50Down
Male accessory glands43 ± 44 of 4 1.10None
Virgin spermatheca23 ± 24 of 4 0.59Down
Mated spermatheca29 ± 14 of 4 0.75Down
Adult carcass41 ± 34 of 4 1.00None
Larval CNS58 ± 44 of 4 1.47Up
Larval Salivary gland36 ± 34 of 4 0.90None
Larval midgut23 ± 14 of 4 0.57Down
Larval tubule43 ± 44 of 4 1.10None
Larval hindgut26 ± 14 of 4 0.66Down
Larval fat body71 ± 84 of 4 1.80Up
Larval trachea58 ± 74 of 4 1.45Up
Larval carcass27 ± 14 of 4 0.69Down
S2 cells (growing)16 ± 14 of 4 0.42Down
Whole fly40 ± 24 of 4

Looking for FBgn0037017. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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