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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037018 through 18771 annotations produced 1 hits



(CG4042):

Annotation Number : CG4042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037018
Gbrowse : chr3L:20763242-20764223 (-) // 99.49 //
Probeset : 1623293_at
Accessions : protein= NP_649250;, nucleotide= NM_140993;
Pathway : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0037018.
BDGP gene expression has embryonic in situ data for CG4042: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0037018 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 ± 24 of 4 1.00None
Head111 ± 94 of 4 0.80None
Eye110 ± 34 of 4 0.82None
Thoracicoabdominal ganglion163 ± 34 of 4 1.20None
Salivary gland176 ± 104 of 4 1.30Up
Crop88 ± 24 of 4 0.70Down
Midgut180 ± 144 of 4 1.30Up
Tubule227 ± 74 of 4 1.70Up
Hindgut179 ± 64 of 4 1.30Up
Heart136 ± 74 of 4 1.01None
Fat body172 ± 324 of 4 1.28None
Ovary189 ± 154 of 4 1.40Up
Testis111 ± 54 of 4 0.80None
Male accessory glands123 ± 54 of 4 0.90None
Virgin spermatheca134 ± 64 of 4 0.99None
Mated spermatheca159 ± 154 of 4 1.18None
Adult carcass137 ± 134 of 4 1.00None
Larval CNS117 ± 154 of 4 0.86None
Larval Salivary gland113 ± 94 of 4 0.84None
Larval midgut129 ± 94 of 4 0.95None
Larval tubule110 ± 64 of 4 0.80None
Larval hindgut145 ± 64 of 4 1.07None
Larval fat body81 ± 64 of 4 0.60Down
Larval trachea125 ± 44 of 4 0.92None
Larval carcass123 ± 124 of 4 0.91None
S2 cells (growing)124 ± 34 of 4 0.92None
Whole fly135 ± 114 of 4

Looking for FBgn0037018. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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