FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037020 through 18771 annotations produced 1 hits

(CG4289):

Annotation Number : CG4289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037020
Gbrowse : chr3L:20771894-20773478 (+) // 99.6 //
Probeset : 1638164_at
Accessions : protein= NP_649253;, nucleotide= NM_140996;
Pathway : 0005777 // peroxisome // inferred from electronic annotation /// 0005778 // peroxisomal membrane // inferred from sequen
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037020.
Homophila reports that CG4289 is a close match (4e-17) to human gene PEX14 (NP_004556), a gene associated with Zellweger syndrome, 214100 (3).
BioGrid reports that CG4289 interacts with CG6744 CG6905 CG7262 CG5371 .
VDRC has 2 RNAi stocks for FBgn0037020 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	153 ± 2	4 of 4	0.70	Down
Head	139 ± 5	4 of 4	0.70	Down
Eye	176 ± 7	4 of 4	0.84	Down
Thoracicoabdominal ganglion	128 ± 2	4 of 4	0.60	Down
Salivary gland	148 ± 6	4 of 4	0.70	Down
Crop	578 ± 14	4 of 4	2.70	Up
Midgut	843 ± 25	4 of 4	4.00	Up
Tubule	837 ± 57	4 of 4	4.00	Up
Hindgut	448 ± 4	4 of 4	2.10	Up
Heart	185 ± 3	4 of 4	0.88	None
Fat body	195 ± 31	4 of 4	0.93	None
Ovary	241 ± 6	4 of 4	1.10	Up
Testis	75 ± 3	4 of 4	0.40	Down
Male accessory glands	136 ± 5	4 of 4	0.60	Down
Virgin spermatheca	88 ± 3	4 of 4	0.42	Down
Mated spermatheca	82 ± 10	4 of 4	0.39	Down
Adult carcass	129 ± 5	4 of 4	0.60	Down
Larval CNS	224 ± 11	4 of 4	1.07	None
Larval Salivary gland	193 ± 6	4 of 4	0.92	None
Larval midgut	400 ± 35	4 of 4	1.90	Up
Larval tubule	680 ± 51	4 of 4	3.20	Up
Larval hindgut	186 ± 9	4 of 4	0.88	None
Larval fat body	139 ± 11	4 of 4	0.70	Down
Larval trachea	157 ± 7	4 of 4	0.75	Down
Larval carcass	106 ± 6	4 of 4	0.51	Down
S2 cells (growing)	221 ± 4	4 of 4	1.05	None
Whole fly	210 ± 8	4 of 4

Looking for FBgn0037020. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720