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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037021 through 18771 annotations produced 1 hits



(CG11399):

Annotation Number : CG11399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037021
Gbrowse : chr3L:20773443-20779306 (-) // 100.0 //
Probeset : 1625218_at
Accessions : protein= NP_649254;, nucleotide= NM_140997;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0037021.
VDRC has 2 RNAi stocks for FBgn0037021 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain242 114 of 4 2.10Up
Head85 114 of 4 0.70None
Eye50 54 of 4 0.44Down
Thoracicoabdominal ganglion125 54 of 4 1.10None
Salivary gland57 84 of 4 0.50Down
Crop80 74 of 4 0.70Down
Midgut33 54 of 4 0.30Down
Tubule41 24 of 4 0.40Down
Hindgut49 54 of 4 0.40Down
Heart22 34 of 4 0.20Down
Fat body42 104 of 4 0.37Down
Ovary295 224 of 4 2.60Up
Testis7 03 of 4 0.10Down
Male accessory glands78 64 of 4 0.70Down
Virgin spermatheca47 34 of 4 0.41Down
Mated spermatheca54 44 of 4 0.47Down
Adult carcass61 94 of 4 0.50Down
Larval CNS225 554 of 4 1.97Up
Larval Salivary gland105 174 of 4 0.92None
Larval midgut25 43 of 4 0.23Down
Larval tubule34 14 of 4 0.30Down
Larval hindgut35 34 of 4 0.31Down
Larval fat body32 64 of 4 0.30Down
Larval trachea57 104 of 4 0.50Down
Larval carcass56 24 of 4 0.49Down
S2 cells (growing)97 64 of 4 0.85None
Whole fly114 84 of 4

Looking for FBgn0037021. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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