FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037022 through 18771 annotations produced 1 hits

(CG11396):

Annotation Number : CG11396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037022
Gbrowse : chr3L:20779438-20781234 (-) // 100.0 //
Probeset : 1627993_at
Accessions : protein= NP_649255;, nucleotide= NM_140998;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0037022.
BDGP gene expression has embryonic in situ data for CG11396: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037022 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	115 ± 5	4 of 4	1.10	None
Head	80 ± 2	4 of 4	0.80	Down
Eye	104 ± 3	4 of 4	1.03	None
Thoracicoabdominal ganglion	98 ± 2	4 of 4	1.00	None
Salivary gland	134 ± 6	4 of 4	1.32	Up
Crop	59 ± 4	4 of 4	0.60	Down
Midgut	82 ± 3	4 of 4	0.80	Down
Tubule	66 ± 5	4 of 4	0.70	Down
Hindgut	82 ± 5	4 of 4	0.80	Down
Heart	62 ± 3	4 of 4	0.62	Down
Fat body	43 ± 8	4 of 4	0.43	Down
Ovary	184 ± 5	4 of 4	1.80	Up
Testis	80 ± 5	4 of 4	0.80	Down
Male accessory glands	116 ± 4	4 of 4	1.20	None
Virgin spermatheca	51 ± 3	4 of 4	0.50	Down
Mated spermatheca	56 ± 4	4 of 4	0.55	Down
Adult carcass	37 ± 2	4 of 4	0.40	Down
Larval CNS	76 ± 5	4 of 4	0.76	Down
Larval Salivary gland	162 ± 8	4 of 4	1.59	Up
Larval midgut	84 ± 5	4 of 4	0.83	Down
Larval tubule	150 ± 4	4 of 4	1.50	Up
Larval hindgut	101 ± 6	4 of 4	1.00	None
Larval fat body	93 ± 6	4 of 4	0.90	None
Larval trachea	76 ± 1	4 of 4	0.75	Down
Larval carcass	61 ± 3	4 of 4	0.60	Down
S2 cells (growing)	57 ± 3	4 of 4	0.57	Down
Whole fly	101 ± 4	4 of 4

Looking for FBgn0037022. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720