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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037024 through 18771 annotations produced 1 hits



(CG4365):

Annotation Number : CG4365
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037024
Gbrowse : chr3L:20791746-20793181 (+) // 100.0 //
Probeset : 1624638_a_at
Accessions : protein= NP_649258; /// NP_730568; /// NP_730569;, nucleotide= NM_141001; /// NM_168873; /// NM_168874;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0004416 // hydroxyacylglutathione hydrolase activity // inferred from sequence or structural similarity /// 0004416 // h
FlyMine data for FBgn0037024.
BDGP gene expression has embryonic in situ data for CG4365: 14 pix of staining in 5 body parts.
Homophila reports that CG4365 is a close match (3e-46) to human gene BRP17;DYT8;FPD1;KIPP1184;MR1;PDC;PNKD;TAHCCP2 (NP_072094), a gene associated with Paroxysmal nonkinesigenic dyskinesia, 118800 (3).
BioGrid reports that CG4365 interacts with CG4621 .
TRiP has 1 RNAi stocks for FBgn0037024 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037024 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain362 ± 134 of 4 0.70Down
Head360 ± 134 of 4 0.70Down
Eye629 ± 184 of 4 1.22Up
Thoracicoabdominal ganglion382 ± 54 of 4 0.70Down
Salivary gland323 ± 124 of 4 0.63Down
Crop278 ± 84 of 4 0.50Down
Midgut711 ± 134 of 4 1.40Up
Tubule2311 ± 364 of 4 4.50Up
Hindgut382 ± 134 of 4 0.70Down
Heart299 ± 124 of 4 0.58Down
Fat body254 ± 254 of 4 0.49Down
Ovary768 ± 114 of 4 1.50Up
Testis574 ± 54 of 4 1.10None
Male accessory glands616 ± 154 of 4 1.20Up
Virgin spermatheca392 ± 174 of 4 0.76Down
Mated spermatheca332 ± 234 of 4 0.64Down
Adult carcass289 ± 54 of 4 0.60Down
Larval CNS299 ± 94 of 4 0.58Down
Larval Salivary gland275 ± 114 of 4 0.53Down
Larval midgut905 ± 224 of 4 1.75Up
Larval tubule2144 ± 504 of 4 4.20Up
Larval hindgut296 ± 134 of 4 0.57Down
Larval fat body392 ± 294 of 4 0.80Down
Larval trachea318 ± 84 of 4 0.62Down
Larval carcass235 ± 64 of 4 0.46Down
S2 cells (growing)200 ± 14 of 4 0.39Down
Whole fly516 ± 264 of 4

Looking for FBgn0037024. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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