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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037026 through 18771 annotations produced 1 hits



(CG3634):

Annotation Number : CG3634
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037026
Gbrowse : chr3L:20799967-20802344 (-) // 100.0 //
Probeset : 1634970_at
Accessions : protein= NP_649260;, nucleotide= NM_141003;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0037026.
VDRC has 2 RNAi stocks for FBgn0037026 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain190 ± 34 of 4 2.10Up
Head105 ± 54 of 4 1.20None
Eye124 ± 44 of 4 1.35Up
Thoracicoabdominal ganglion151 ± 24 of 4 1.60Up
Salivary gland106 ± 84 of 4 1.16None
Crop108 ± 04 of 4 1.20Up
Midgut59 ± 24 of 4 0.70Down
Tubule91 ± 14 of 4 1.00None
Hindgut83 ± 24 of 4 0.90None
Heart98 ± 24 of 4 1.08None
Fat body68 ± 94 of 4 0.74Down
Ovary163 ± 54 of 4 1.80Up
Testis49 ± 34 of 4 0.50Down
Male accessory glands196 ± 34 of 4 2.10Up
Virgin spermatheca83 ± 54 of 4 0.91None
Mated spermatheca75 ± 54 of 4 0.83None
Adult carcass78 ± 64 of 4 0.90None
Larval CNS215 ± 94 of 4 2.36Up
Larval Salivary gland78 ± 44 of 4 0.86None
Larval midgut42 ± 24 of 4 0.47Down
Larval tubule66 ± 24 of 4 0.70Down
Larval hindgut65 ± 44 of 4 0.72Down
Larval fat body61 ± 24 of 4 0.70Down
Larval trachea150 ± 94 of 4 1.64Up
Larval carcass83 ± 44 of 4 0.91None
S2 cells (growing)232 ± 74 of 4 2.53Up
Whole fly91 ± 34 of 4

Looking for FBgn0037026. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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