Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037027 through 18771 annotations produced 1 hits



(CG3680):

Annotation Number : CG3680
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037027
Gbrowse : chr3L:20802770-20805978 (+) // 100.0 //
Probeset : 1623688_at
Accessions : protein= NP_649261;, nucleotide= NM_141004;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0037027.
BioGrid reports that CG3680 interacts with CG8409 .
VDRC has 3 RNAi stocks for FBgn0037027 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 ± 44 of 4 0.90None
Head60 ± 44 of 4 0.50Down
Eye54 ± 44 of 4 0.45Down
Thoracicoabdominal ganglion93 ± 84 of 4 0.80Down
Salivary gland90 ± 84 of 4 0.75Down
Crop64 ± 24 of 4 0.50Down
Midgut51 ± 34 of 4 0.40Down
Tubule33 ± 24 of 4 0.30Down
Hindgut62 ± 24 of 4 0.50Down
Heart43 ± 34 of 4 0.36Down
Fat body61 ± 94 of 4 0.51Down
Ovary269 ± 24 of 4 2.20Up
Testis71 ± 54 of 4 0.60Down
Male accessory glands102 ± 54 of 4 0.80Down
Virgin spermatheca26 ± 24 of 4 0.22Down
Mated spermatheca27 ± 24 of 4 0.23Down
Adult carcass68 ± 24 of 4 0.60Down
Larval CNS115 ± 64 of 4 0.96None
Larval Salivary gland81 ± 54 of 4 0.67Down
Larval midgut35 ± 20 of 4 0.29Down
Larval tubule80 ± 34 of 4 0.70Down
Larval hindgut65 ± 14 of 4 0.54Down
Larval fat body67 ± 54 of 4 0.60Down
Larval trachea58 ± 44 of 4 0.48Down
Larval carcass56 ± 74 of 4 0.47Down
S2 cells (growing)147 ± 44 of 4 1.22Up
Whole fly121 ± 44 of 4

Looking for FBgn0037027. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime