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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037028 through 18771 annotations produced 1 hits



(CG3618):

Annotation Number : CG3618
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037028
Gbrowse : chr3L:20806452-20809136 (-) // 100.0 //
Probeset : 1637110_at
Accessions : protein= NP_649262;, nucleotide= NM_141005;
Interpro : 0004383 // guanylate cyclase activity // non-traceable author statement /// 0004383 // guanylate cyclase activity // inf
FlyMine data for FBgn0037028.
BDGP gene expression has embryonic in situ data for CG3618: 32 pix of staining in 15 body parts.
TRiP has 1 RNAi stocks for FBgn0037028 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037028 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain544 124 of 4 6.60Up
Head308 74 of 4 3.70Up
Eye682 294 of 4 8.21Up
Thoracicoabdominal ganglion397 54 of 4 4.80Up
Salivary gland4 00 of 4 0.05Down
Crop2 00 of 4 0.00Down
Midgut17 32 of 4 0.20Down
Tubule10 11 of 4 0.10Down
Hindgut12 12 of 4 0.20Down
Heart18 14 of 4 0.22Down
Fat body20 53 of 4 0.25Down
Ovary106 14 of 4 1.30Up
Testis125 24 of 4 1.50Up
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca1 00 of 4 0.02Down
Adult carcass30 23 of 4 0.40Down
Larval CNS355 204 of 4 4.28Up
Larval Salivary gland6 20 of 4 0.08Down
Larval midgut3 00 of 4 0.04Down
Larval tubule22 14 of 4 0.30Down
Larval hindgut8 30 of 4 0.10Down
Larval fat body15 51 of 4 0.20Down
Larval trachea27 124 of 4 0.33Down
Larval carcass21 30 of 4 0.25Down
S2 cells (growing)110 54 of 4 1.33Up
Whole fly83 44 of 4

Looking for FBgn0037028. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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