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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037030 through 18771 annotations produced 1 hits



(CG3288):

Annotation Number : CG3288
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037030
Gbrowse : chr3L:20829310-20830055 (+) // 100.0 //
Probeset : 1638142_at
Accessions : protein= NP_649264;, nucleotide= NM_141007;
FlyMine data for FBgn0037030.
VDRC has 1 RNAi stocks for FBgn0037030 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.90None
Head4 20 of 4 0.70None
Eye0 00 of 4 0.07Down
Thoracicoabdominal ganglion7 32 of 4 1.10None
Salivary gland8 50 of 4 1.29None
Crop5 10 of 4 0.80None
Midgut7 10 of 4 1.10None
Tubule4 10 of 4 0.70Down
Hindgut4 11 of 4 0.60None
Heart0 00 of 4 0.09Down
Fat body0 00 of 4 0.13Down
Ovary2 10 of 4 0.40Down
Testis67 14 of 4 9.80Up
Male accessory glands9 30 of 4 1.30None
Virgin spermatheca3 10 of 4 0.54None
Mated spermatheca2 10 of 4 0.34Down
Adult carcass13 11 of 4 1.90Up
Larval CNS1 10 of 4 0.24Down
Larval Salivary gland4 10 of 4 0.57None
Larval midgut7 20 of 4 1.04None
Larval tubule6 10 of 4 1.00None
Larval hindgut3 10 of 4 0.51None
Larval fat body14 61 of 4 2.10None
Larval trachea2 10 of 4 0.32Down
Larval carcass8 10 of 4 1.20None
S2 cells (growing)2 10 of 4 0.41None
Whole fly6 01 of 4

Looking for FBgn0037030. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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