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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037031 through 18771 annotations produced 1 hits


Annotation Number : CG11456
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037031
Gbrowse : chr3L:20835100-20837440 (+) // 100.0 //
Probeset : 1627849_at
Accessions : protein= NP_001163484; /// NP_649265;, nucleotide= NM_001170013; /// NM_141008;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037031.
BDGP gene expression has embryonic in situ data for CG11456: 4 pix of staining in 1 body parts.
Homophila reports that CG11456 is a close match (2e-11) to human gene MRX89;ZNF41 (NP_700359), a gene associated with Mental retardation, X-linked-89 (3).
BioGrid reports that CG11456 interacts with CG13005 CG2981 CG6467 .
TRiP has 1 RNAi stocks for FBgn0037031 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037031 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 14 of 4 2.80Up
Head52 24 of 4 1.30Up
Eye52 24 of 4 1.28Up
Thoracicoabdominal ganglion87 34 of 4 2.20Up
Salivary gland28 62 of 4 0.70None
Crop35 04 of 4 0.90Down
Midgut25 14 of 4 0.60Down
Tubule26 13 of 4 0.70Down
Hindgut24 24 of 4 0.60Down
Heart23 14 of 4 0.58Down
Fat body26 34 of 4 0.65Down
Ovary78 24 of 4 1.90Up
Testis17 24 of 4 0.40Down
Male accessory glands71 34 of 4 1.80Up
Virgin spermatheca43 24 of 4 1.06None
Mated spermatheca43 24 of 4 1.08None
Adult carcass25 43 of 4 0.60Down
Larval CNS112 94 of 4 2.77Up
Larval Salivary gland22 24 of 4 0.56Down
Larval midgut20 01 of 4 0.51Down
Larval tubule19 14 of 4 0.50Down
Larval hindgut29 14 of 4 0.73Down
Larval fat body17 24 of 4 0.40Down
Larval trachea46 54 of 4 1.15None
Larval carcass29 24 of 4 0.72Down
S2 cells (growing)34 14 of 4 0.85Down
Whole fly40 04 of 4

Looking for FBgn0037031. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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