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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037040 through 18771 annotations produced 2 hits



(CG12983):

Annotation Number : Stencil:3L:20883990:20882739:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037040
Gbrowse : chr3L:20958563-20959814 (-) // 100.0 //
Probeset : 1625673_at
Accessions : protein= NP_001137990; /// NP_001137991; /// NP_001137992; /// NP_649274;, nucleotide= NM_001144518; /// NM_001144519; /// NM_001144520; /// NM_141017;
FlyMine data for FBgn0037040.
BDGP gene expression has embryonic in situ data for CG12983: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037040 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head3 10 of 4 0.20Down
Eye1 00 of 4 0.07Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland6 50 of 4 0.34None
Crop3 10 of 4 0.20Down
Midgut0 00 of 4 0.00Down
Tubule3 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.07Down
Fat body9 20 of 4 0.46Down
Ovary2 00 of 4 0.10Down
Testis312 184 of 415.40Up
Male accessory glands6 20 of 4 0.30Down
Virgin spermatheca6 11 of 4 0.32Down
Mated spermatheca8 11 of 4 0.43Down
Adult carcass3 10 of 4 0.20Down
Larval CNS6 23 of 4 0.30Down
Larval Salivary gland3 10 of 4 0.16Down
Larval midgut1 00 of 4 0.09Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.08Down
Larval fat body41 213 of 4 2.00None
Larval trachea3 10 of 4 0.15Down
Larval carcass3 10 of 4 0.17Down
S2 cells (growing)1 00 of 4 0.08Down
Whole fly20 34 of 4



(CG12983):

Annotation Number : CG12983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037040
Gbrowse : chr3L:20955758-20958433 (-) // 100.0 //
Probeset : 1633093_at
Accessions : protein= NP_001137990; /// NP_001137991; /// NP_001137992; /// NP_649274;, nucleotide= NM_001144518; /// NM_001144519; /// NM_001144520; /// NM_141017;
FlyMine data for FBgn0037040.
BDGP gene expression has embryonic in situ data for CG12983: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037040 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland5 41 of 4 0.11Down
Crop3 10 of 4 0.10Down
Midgut1 10 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body0 00 of 4 0.01Down
Ovary1 00 of 4 0.00Down
Testis763 104 of 414.00Up
Male accessory glands9 00 of 4 0.20Down
Virgin spermatheca2 10 of 4 0.04Down
Mated spermatheca2 00 of 4 0.05Down
Adult carcass8 30 of 4 0.10Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.03Down
Larval midgut1 00 of 4 0.03Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.02Down
Larval fat body72 443 of 4 1.30None
Larval trachea4 41 of 4 0.08Down
Larval carcass1 00 of 4 0.03Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly54 54 of 4

Looking for FBgn0037040. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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