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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037042 through 18771 annotations produced 1 hits



(CG12984):

Annotation Number : CG12984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037042
Gbrowse : chr3L:20984815-20985268 (+) // 100.0 //
Probeset : 1627941_at
Accessions : protein= NP_649276;, nucleotide= NM_141019;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037042.
BioGrid reports that CG12984 interacts with CG18063 .
VDRC has 1 RNAi stocks for FBgn0037042 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.20None
Head2 ± 10 of 4 0.50None
Eye3 ± 10 of 4 0.79None
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland4 ± 30 of 4 1.02None
Crop3 ± 10 of 4 0.70None
Midgut2 ± 10 of 4 0.60None
Tubule1 ± 00 of 4 0.40Down
Hindgut2 ± 00 of 4 0.50None
Heart2 ± 00 of 4 0.45None
Fat body6 ± 40 of 4 1.44None
Ovary4 ± 00 of 4 0.90None
Testis19 ± 24 of 4 4.50Up
Male accessory glands4 ± 10 of 4 0.90None
Virgin spermatheca1 ± 00 of 4 0.25None
Mated spermatheca2 ± 10 of 4 0.46None
Adult carcass7 ± 20 of 4 1.80None
Larval CNS2 ± 10 of 4 0.60None
Larval Salivary gland1 ± 00 of 4 0.37None
Larval midgut1 ± 00 of 4 0.41None
Larval tubule4 ± 10 of 4 1.00None
Larval hindgut4 ± 10 of 4 1.02None
Larval fat body10 ± 21 of 4 2.30None
Larval trachea2 ± 00 of 4 0.52None
Larval carcass2 ± 00 of 4 0.67None
S2 cells (growing)4 ± 10 of 4 0.95None
Whole fly4 ± 10 of 4

Looking for FBgn0037042. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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