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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037044 through 18771 annotations produced 1 hits


Annotation Number : CG10585
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037044
Gbrowse : chr3L:21020994-21023241 (+) // 99.7 //
Probeset : 1623664_at
Accessions : protein= NP_649277;, nucleotide= NM_141020;
Interpro : 0000010 // trans-hexaprenyltranstransferase activity // inferred from sequence or structural similarity /// 0000010 // t
FlyMine data for FBgn0037044.
BDGP gene expression has embryonic in situ data for CG10585: 17 pix of staining in 17 body parts.
Homophila reports that CG10585 is a close match (2e-61) to human gene C6orf210;DLP1;PDSS2 (NP_065114), a gene associated with Coenzyme Q10 deficiency, 607426 (3).
BioGrid reports that CG10585 interacts with CG5009 CG8247 .
VDRC has 3 RNAi stocks for FBgn0037044 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain162 34 of 4 2.00Up
Head77 34 of 4 0.90None
Eye63 24 of 4 0.76Down
Thoracicoabdominal ganglion131 34 of 4 1.60Up
Salivary gland76 74 of 4 0.92None
Crop320 164 of 4 3.90Up
Midgut54 54 of 4 0.70Down
Tubule96 54 of 4 1.20Up
Hindgut125 54 of 4 1.50Up
Heart39 14 of 4 0.48Down
Fat body25 34 of 4 0.31Down
Ovary147 44 of 4 1.80Up
Testis52 24 of 4 0.60Down
Male accessory glands43 24 of 4 0.50Down
Virgin spermatheca27 04 of 4 0.34Down
Mated spermatheca32 24 of 4 0.39Down
Adult carcass68 84 of 4 0.80None
Larval CNS106 54 of 4 1.28Up
Larval Salivary gland128 54 of 4 1.55Up
Larval midgut48 34 of 4 0.59Down
Larval tubule57 24 of 4 0.70Down
Larval hindgut100 54 of 4 1.21Up
Larval fat body31 34 of 4 0.40Down
Larval trachea120 104 of 4 1.45Up
Larval carcass78 24 of 4 0.94None
S2 cells (growing)100 44 of 4 1.20Up
Whole fly83 34 of 4

Looking for FBgn0037044. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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