FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037050 through 18771 annotations produced 1 hits

(CG10566):

Annotation Number : CG10566
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037050
Gbrowse : chr3L:21124545-21126412 (+) // 100.0 //
Probeset : 1637654_at
Accessions : protein= NP_649283;, nucleotide= NM_141026;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037050.
BDGP gene expression has embryonic in situ data for CG10566: 11 pix of staining in 4 body parts.
BioGrid reports that CG10566 interacts with CG6167 CG14792 CG31999 CG6720 .
TRiP has 1 RNAi stocks for FBgn0037050 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037050 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	311 ± 9	4 of 4	13.60	Up
Head	111 ± 6	4 of 4	4.90	Up
Eye	218 ± 10	4 of 4	9.51	Up
Thoracicoabdominal ganglion	272 ± 7	4 of 4	11.90	Up
Salivary gland	20 ± 4	0 of 4	0.88	None
Crop	8 ± 1	0 of 4	0.40	Down
Midgut	7 ± 1	0 of 4	0.30	Down
Tubule	6 ± 0	0 of 4	0.30	Down
Hindgut	12 ± 1	0 of 4	0.60	Down
Heart	1 ± 0	0 of 4	0.05	Down
Fat body	7 ± 3	0 of 4	0.33	Down
Ovary	6 ± 1	0 of 4	0.30	Down
Testis	168 ± 11	4 of 4	7.30	Up
Male accessory glands	9 ± 2	1 of 4	0.40	Down
Virgin spermatheca	3 ± 1	0 of 4	0.16	Down
Mated spermatheca	3 ± 1	0 of 4	0.15	Down
Adult carcass	6 ± 3	0 of 4	0.30	Down
Larval CNS	186 ± 9	4 of 4	8.14	Up
Larval Salivary gland	5 ± 1	0 of 4	0.25	Down
Larval midgut	13 ± 3	2 of 4	0.57	Down
Larval tubule	8 ± 2	1 of 4	0.40	Down
Larval hindgut	9 ± 1	0 of 4	0.40	Down
Larval fat body	44 ± 17	3 of 4	1.90	None
Larval trachea	7 ± 8	1 of 4	0.34	Down
Larval carcass	11 ± 1	0 of 4	0.50	Down
S2 cells (growing)	10 ± 0	1 of 4	0.45	Down
Whole fly	23 ± 2	4 of 4

Looking for FBgn0037050. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720