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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037051 through 18771 annotations produced 1 hits



(CG10565):

Annotation Number : CG10565
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037051
Gbrowse : chr3L:21126348-21129141 (-) // 100.0 //
Probeset : 1623998_at
Accessions : protein= NP_649284;, nucleotide= NM_141027;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0037051.
BDGP gene expression has embryonic in situ data for CG10565: 20 pix of staining in 12 body parts.
BioGrid reports that CG10565 interacts with CG11852 CG7182 CG17134 .
VDRC has 2 RNAi stocks for FBgn0037051 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain240 14 of 4 0.70Down
Head220 104 of 4 0.60Down
Eye233 44 of 4 0.68Down
Thoracicoabdominal ganglion231 44 of 4 0.70Down
Salivary gland317 34 of 4 0.92None
Crop295 54 of 4 0.90None
Midgut180 84 of 4 0.50Down
Tubule258 214 of 4 0.70Down
Hindgut230 74 of 4 0.70Down
Heart168 74 of 4 0.49Down
Fat body243 214 of 4 0.71Down
Ovary648 64 of 4 1.90Up
Testis483 294 of 4 1.40Up
Male accessory glands445 204 of 4 1.30Up
Virgin spermatheca120 94 of 4 0.35Down
Mated spermatheca150 94 of 4 0.43Down
Adult carcass206 94 of 4 0.60Down
Larval CNS468 214 of 4 1.36Up
Larval Salivary gland382 324 of 4 1.11None
Larval midgut167 134 of 4 0.48Down
Larval tubule105 24 of 4 0.30Down
Larval hindgut283 234 of 4 0.82None
Larval fat body138 144 of 4 0.40Down
Larval trachea378 264 of 4 1.10None
Larval carcass373 774 of 4 1.08None
S2 cells (growing)425 104 of 4 1.23Up
Whole fly345 184 of 4

Looking for FBgn0037051. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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