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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037059 through 18771 annotations produced 1 hits


(CG10510):

Annotation Number : CG10510
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037059
Gbrowse : chr3L:21201250-21203184 (-) // 100.0 //
Probeset : 1632708_at
Accessions : protein= NP_649291;, nucleotide= NM_141034;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037059.
BioGrid reports that CG10510 interacts with CG4511 CG8282 CG10602 CG11870 CG15124 CG1591 CG17387 CG17520 CG2674 CG2774 CG3644 CG5642 CG5798 CG6030 CG6251 CG6398 CG6519 CG7773 CG8479 .
VDRC has 2 RNAi stocks for FBgn0037059 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.20Down
Salivary gland19 ± 60 of 4 0.49Down
Crop4 ± 11 of 4 0.10Down
Midgut5 ± 20 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.05Down
Fat body6 ± 20 of 4 0.17Down
Ovary3 ± 00 of 4 0.10Down
Testis489 ± 104 of 412.70Up
Male accessory glands8 ± 10 of 4 0.20Down
Virgin spermatheca4 ± 10 of 4 0.10Down
Mated spermatheca3 ± 10 of 4 0.10Down
Adult carcass8 ± 20 of 4 0.20Down
Larval CNS4 ± 00 of 4 0.12Down
Larval Salivary gland3 ± 10 of 4 0.10Down
Larval midgut2 ± 00 of 4 0.07Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.04Down
Larval fat body60 ± 264 of 4 1.60None
Larval trachea1 ± 10 of 4 0.05Down
Larval carcass4 ± 10 of 4 0.11Down
S2 cells (growing)5 ± 00 of 4 0.14Down
Whole fly38 ± 24 of 4

Looking for FBgn0037059. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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