FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037060 through 18771 annotations produced 3 hits

(CG10508):

Annotation Number : CG10508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037060
Gbrowse : chr3L:21206861-21208225 (+) // 100.0 //
Probeset : 1626447_at
Accessions : protein= NP_001137994; /// NP_788560; /// NP_788562; /// NP_996134;, nucleotide= NM_001144522; /// NM_176382; /// NM_176384; /// NM_206412;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0037060.
BioGrid reports that CG10508 interacts with CG16721 CG5939 CG1455 CG14840 CG3151 CG3938 CG4394 CG4755 CG4767 CG9213 CG9426 CG9842 .
VDRC has 2 RNAi stocks for FBgn0037060 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	78 ± 4	4 of 4	7.90	Up
Head	13 ± 1	2 of 4	1.40	None
Eye	10 ± 0	2 of 4	1.05	None
Thoracicoabdominal ganglion	66 ± 6	4 of 4	6.80	Up
Salivary gland	5 ± 3	0 of 4	0.56	None
Crop	1 ± 0	0 of 4	0.20	Down
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	1 ± 0	0 of 4	0.20	Down
Hindgut	2 ± 1	0 of 4	0.20	Down
Heart	1 ± 0	0 of 4	0.17	Down
Fat body	4 ± 3	0 of 4	0.41	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	74 ± 9	4 of 4	7.50	Up
Male accessory glands	3 ± 1	0 of 4	0.30	Down
Virgin spermatheca	2 ± 1	0 of 4	0.28	Down
Mated spermatheca	3 ± 1	0 of 4	0.40	Down
Adult carcass	2 ± 0	0 of 4	0.30	Down
Larval CNS	66 ± 8	4 of 4	6.70	Up
Larval Salivary gland	0 ± 0	0 of 4	0.08	Down
Larval midgut	2 ± 0	0 of 4	0.20	Down
Larval tubule	3 ± 1	0 of 4	0.30	Down
Larval hindgut	1 ± 0	0 of 4	0.11	Down
Larval fat body	4 ± 3	1 of 4	0.50	None
Larval trachea	1 ± 1	0 of 4	0.19	Down
Larval carcass	1 ± 0	0 of 4	0.10	Down
S2 cells (growing)	0 ± 0	0 of 4	0.07	Down
Whole fly	9 ± 1	0 of 4

(CG10508):

Annotation Number : CG10508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037060
Gbrowse : chr3L:21206861-21208225 (+) // 100.0 //
Probeset : 1625922_a_at
Accessions : protein= NP_001137994; /// NP_788560; /// NP_788562; /// NP_996134;, nucleotide= NM_001144522; /// NM_176382; /// NM_176384; /// NM_206412;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0037060.
BioGrid reports that CG10508 interacts with CG16721 CG5939 CG1455 CG14840 CG3151 CG3938 CG4394 CG4755 CG4767 CG9213 CG9426 CG9842 .
VDRC has 2 RNAi stocks for FBgn0037060 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	421 ± 12	4 of 4	22.90	Up
Head	88 ± 5	4 of 4	4.80	Up
Eye	126 ± 9	4 of 4	6.89	Up
Thoracicoabdominal ganglion	282 ± 11	4 of 4	15.40	Up
Salivary gland	11 ± 3	0 of 4	0.63	None
Crop	8 ± 0	0 of 4	0.50	None
Midgut	3 ± 1	0 of 4	0.20	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	10 ± 1	2 of 4	0.60	None
Heart	14 ± 2	3 of 4	0.80	None
Fat body	9 ± 7	0 of 4	0.52	None
Ovary	2 ± 0	0 of 4	0.10	Down
Testis	151 ± 12	4 of 4	8.20	Up
Male accessory glands	3 ± 1	0 of 4	0.20	Down
Virgin spermatheca	3 ± 1	1 of 4	0.16	Down
Mated spermatheca	4 ± 1	0 of 4	0.25	Down
Adult carcass	17 ± 4	1 of 4	0.90	None
Larval CNS	75 ± 8	4 of 4	4.13	Up
Larval Salivary gland	4 ± 1	0 of 4	0.23	Down
Larval midgut	6 ± 2	0 of 4	0.34	None
Larval tubule	10 ± 1	3 of 4	0.60	None
Larval hindgut	4 ± 1	0 of 4	0.24	Down
Larval fat body	14 ± 5	2 of 4	0.80	None
Larval trachea	3 ± 2	0 of 4	0.19	Down
Larval carcass	4 ± 2	0 of 4	0.26	Down
S2 cells (growing)	5 ± 1	0 of 4	0.31	Down
Whole fly	18 ± 4	4 of 4

(CG10508):

Annotation Number : CG10508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037060
Gbrowse : chr3L:21203338-21209154 (+) // 100.0 //
Probeset : 1623133_a_at
Accessions : protein= NP_001137994; /// NP_788560; /// NP_788562; /// NP_996134;, nucleotide= NM_001144522; /// NM_176382; /// NM_176384; /// NM_206412;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0037060.
BioGrid reports that CG10508 interacts with CG16721 CG5939 CG1455 CG14840 CG3151 CG3938 CG4394 CG4755 CG4767 CG9213 CG9426 CG9842 .
VDRC has 2 RNAi stocks for FBgn0037060 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	724 ± 17	4 of 4	17.80	Up
Head	196 ± 10	4 of 4	4.80	Up
Eye	256 ± 18	4 of 4	6.30	Up
Thoracicoabdominal ganglion	560 ± 8	4 of 4	13.80	Up
Salivary gland	31 ± 6	3 of 4	0.77	None
Crop	19 ± 1	4 of 4	0.50	Down
Midgut	6 ± 1	0 of 4	0.20	Down
Tubule	9 ± 1	2 of 4	0.20	Down
Hindgut	21 ± 0	4 of 4	0.50	Down
Heart	32 ± 1	4 of 4	0.80	None
Fat body	50 ± 33	4 of 4	1.24	None
Ovary	2 ± 0	0 of 4	0.10	Down
Testis	249 ± 22	4 of 4	6.10	Up
Male accessory glands	17 ± 0	3 of 4	0.40	Down
Virgin spermatheca	57 ± 4	4 of 4	1.42	Up
Mated spermatheca	62 ± 17	4 of 4	1.54	None
Adult carcass	50 ± 4	4 of 4	1.20	None
Larval CNS	306 ± 6	4 of 4	7.53	Up
Larval Salivary gland	8 ± 1	1 of 4	0.20	Down
Larval midgut	5 ± 2	1 of 4	0.14	Down
Larval tubule	23 ± 2	4 of 4	0.60	Down
Larval hindgut	15 ± 2	4 of 4	0.37	Down
Larval fat body	30 ± 5	4 of 4	0.80	None
Larval trachea	5 ± 5	1 of 4	0.14	Down
Larval carcass	9 ± 0	4 of 4	0.23	Down
S2 cells (growing)	3 ± 0	0 of 4	0.09	Down
Whole fly	40 ± 3	4 of 4

Looking for FBgn0037060. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720