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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037065 through 18771 annotations produced 1 hits



(CG12974):

Annotation Number : CG12974
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037065
Gbrowse : chr3L:21275113-21279062 (-) // 100.0 //
Probeset : 1632865_s_at
Accessions : protein= NP_649296; /// NP_730613;, nucleotide= NM_141039; /// NM_168895;
FlyMine data for FBgn0037065.
VDRC has 2 RNAi stocks for FBgn0037065 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head5 10 of 4 0.00Down
Eye3 10 of 4 0.02Down
Thoracicoabdominal ganglion5 20 of 4 0.00Down
Salivary gland21 21 of 4 0.12Down
Crop9 02 of 4 0.10Down
Midgut1932 474 of 410.70Up
Tubule512 224 of 4 2.80Up
Hindgut524 124 of 4 2.90Up
Heart6 21 of 4 0.04Down
Fat body11 42 of 4 0.06Down
Ovary2 00 of 4 0.00Down
Testis11 04 of 4 0.10Down
Male accessory glands6 10 of 4 0.00Down
Virgin spermatheca12 14 of 4 0.07Down
Mated spermatheca26 34 of 4 0.15Down
Adult carcass12 31 of 4 0.10Down
Larval CNS6 13 of 4 0.04Down
Larval Salivary gland5 10 of 4 0.03Down
Larval midgut2389 1284 of 413.18Up
Larval tubule1332 604 of 4 7.40Up
Larval hindgut551 284 of 4 3.04Up
Larval fat body19 24 of 4 0.10Down
Larval trachea6 21 of 4 0.03Down
Larval carcass8 04 of 4 0.05Down
S2 cells (growing)4 00 of 4 0.03Down
Whole fly181 204 of 4

Looking for FBgn0037065. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime