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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037073 through 18771 annotations produced 1 hits



(CG7338):

Annotation Number : CG7338
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037073
Gbrowse : chr3L:21328317-21331283 (+) // 100.0 //
Probeset : 1632850_at
Accessions : protein= NP_649304;, nucleotide= NM_141047;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotatio
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0037073.
BioGrid reports that CG7338 interacts with CG7788 .
VDRC has 2 RNAi stocks for FBgn0037073 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 ± 34 of 4 0.40Down
Head103 ± 64 of 4 0.50Down
Eye85 ± 24 of 4 0.39Down
Thoracicoabdominal ganglion97 ± 14 of 4 0.40Down
Salivary gland159 ± 84 of 4 0.72Down
Crop162 ± 74 of 4 0.70Down
Midgut123 ± 84 of 4 0.60Down
Tubule116 ± 194 of 4 0.50Down
Hindgut123 ± 54 of 4 0.60Down
Heart113 ± 84 of 4 0.51Down
Fat body133 ± 174 of 4 0.60Down
Ovary381 ± 94 of 4 1.70Up
Testis67 ± 24 of 4 0.30Down
Male accessory glands366 ± 154 of 4 1.70Up
Virgin spermatheca94 ± 84 of 4 0.42Down
Mated spermatheca137 ± 74 of 4 0.62Down
Adult carcass130 ± 24 of 4 0.60Down
Larval CNS187 ± 144 of 4 0.84None
Larval Salivary gland217 ± 84 of 4 0.98None
Larval midgut82 ± 54 of 4 0.37Down
Larval tubule68 ± 34 of 4 0.30Down
Larval hindgut151 ± 164 of 4 0.68Down
Larval fat body85 ± 74 of 4 0.40Down
Larval trachea278 ± 454 of 4 1.25None
Larval carcass196 ± 434 of 4 0.88None
S2 cells (growing)268 ± 114 of 4 1.21None
Whole fly221 ± 164 of 4

Looking for FBgn0037073. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime