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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037076 through 18771 annotations produced 1 hits



(CG12972):

Annotation Number : CG12972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037076
Gbrowse : chr3L:21338137-21339854 (-) // 100.0 //
Probeset : 1630696_at
Accessions : protein= NP_649307;, nucleotide= NM_141050;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation"
FlyMine data for FBgn0037076.
BioGrid reports that CG12972 interacts with CG17237 CG31534 CG3858 .
VDRC has 2 RNAi stocks for FBgn0037076 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 24 of 4 0.90Down
Head13 14 of 4 0.40Down
Eye29 24 of 4 0.77Down
Thoracicoabdominal ganglion11 13 of 4 0.30Down
Salivary gland14 10 of 4 0.38Down
Crop7 11 of 4 0.20Down
Midgut36 34 of 4 1.00None
Tubule18 13 of 4 0.50Down
Hindgut8 13 of 4 0.20Down
Heart3 10 of 4 0.09Down
Fat body5 11 of 4 0.15Down
Ovary82 34 of 4 2.20Up
Testis6 10 of 4 0.20Down
Male accessory glands30 14 of 4 0.80Down
Virgin spermatheca14 04 of 4 0.38Down
Mated spermatheca16 13 of 4 0.44Down
Adult carcass13 11 of 4 0.40Down
Larval CNS41 44 of 4 1.08None
Larval Salivary gland62 64 of 4 1.65Up
Larval midgut23 14 of 4 0.61Down
Larval tubule32 14 of 4 0.80Down
Larval hindgut9 12 of 4 0.24Down
Larval fat body14 23 of 4 0.40Down
Larval trachea22 24 of 4 0.58Down
Larval carcass14 14 of 4 0.38Down
S2 cells (growing)201 64 of 4 5.30Up
Whole fly38 14 of 4

Looking for FBgn0037076. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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