FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037076 through 18771 annotations produced 1 hits

(CG12972):

Annotation Number : CG12972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037076
Gbrowse : chr3L:21338137-21339854 (-) // 100.0 //
Probeset : 1630696_at
Accessions : protein= NP_649307;, nucleotide= NM_141050;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation"
FlyMine data for FBgn0037076.
BioGrid reports that CG12972 interacts with CG17237 CG31534 CG3858 .
VDRC has 2 RNAi stocks for FBgn0037076 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	33 ± 2	4 of 4	0.90	Down
Head	13 ± 1	4 of 4	0.40	Down
Eye	29 ± 2	4 of 4	0.77	Down
Thoracicoabdominal ganglion	11 ± 1	3 of 4	0.30	Down
Salivary gland	14 ± 1	0 of 4	0.38	Down
Crop	7 ± 1	1 of 4	0.20	Down
Midgut	36 ± 3	4 of 4	1.00	None
Tubule	18 ± 1	3 of 4	0.50	Down
Hindgut	8 ± 1	3 of 4	0.20	Down
Heart	3 ± 1	0 of 4	0.09	Down
Fat body	5 ± 1	1 of 4	0.15	Down
Ovary	82 ± 3	4 of 4	2.20	Up
Testis	6 ± 1	0 of 4	0.20	Down
Male accessory glands	30 ± 1	4 of 4	0.80	Down
Virgin spermatheca	14 ± 0	4 of 4	0.38	Down
Mated spermatheca	16 ± 1	3 of 4	0.44	Down
Adult carcass	13 ± 1	1 of 4	0.40	Down
Larval CNS	41 ± 4	4 of 4	1.08	None
Larval Salivary gland	62 ± 6	4 of 4	1.65	Up
Larval midgut	23 ± 1	4 of 4	0.61	Down
Larval tubule	32 ± 1	4 of 4	0.80	Down
Larval hindgut	9 ± 1	2 of 4	0.24	Down
Larval fat body	14 ± 2	3 of 4	0.40	Down
Larval trachea	22 ± 2	4 of 4	0.58	Down
Larval carcass	14 ± 1	4 of 4	0.38	Down
S2 cells (growing)	201 ± 6	4 of 4	5.30	Up
Whole fly	38 ± 1	4 of 4

Looking for FBgn0037076. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720