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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037078 through 18771 annotations produced 1 hits



(CG12971):

Annotation Number : CG12971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037078
Gbrowse : chr3L:21348376-21349595 (-) // 100.0 //
Probeset : 1635019_at
Accessions : protein= NP_649309;, nucleotide= NM_141052;
FlyMine data for FBgn0037078.
VDRC has 2 RNAi stocks for FBgn0037078 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.00None
Head3 ± 00 of 4 2.10None
Eye2 ± 10 of 4 1.58None
Thoracicoabdominal ganglion1 ± 00 of 4 0.90None
Salivary gland2 ± 00 of 4 1.82None
Crop3 ± 10 of 4 2.00None
Midgut1 ± 00 of 4 1.20None
Tubule2 ± 00 of 4 1.40None
Hindgut1 ± 00 of 4 1.00None
Heart3 ± 10 of 4 2.26None
Fat body4 ± 30 of 4 2.97None
Ovary3 ± 10 of 4 2.30None
Testis1 ± 00 of 4 0.70None
Male accessory glands3 ± 10 of 4 2.30None
Virgin spermatheca1 ± 00 of 4 0.69None
Mated spermatheca1 ± 00 of 4 0.74None
Adult carcass2 ± 00 of 4 1.50None
Larval CNS2 ± 30 of 4 1.90None
Larval Salivary gland1 ± 00 of 4 0.89None
Larval midgut7 ± 20 of 4 4.89None
Larval tubule1 ± 00 of 4 1.10None
Larval hindgut1 ± 00 of 4 1.02None
Larval fat body2 ± 00 of 4 1.40None
Larval trachea1 ± 00 of 4 1.23None
Larval carcass3 ± 10 of 4 2.40None
S2 cells (growing)1 ± 00 of 4 1.06None
Whole fly1 ± 00 of 4

Looking for FBgn0037078. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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