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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037084 through 18771 annotations produced 1 hits



syntaxin (Syx6):

Annotation Number : CG7736
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037084
Gbrowse : chr2R:7107440-7109851 (+) // 100.0 //
Probeset : 1639075_a_at
Accessions : protein= NP_995814; /// NP_995815; /// NP_995816;, nucleotide= NM_206092; /// NM_206093; /// NM_206094;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // non-trac
Interpro : 0005484 // SNAP receptor activity // inferred from sequence or structural similarity /// 0005484 // SNAP receptor activi
FlyMine data for FBgn0037084.
BDGP gene expression has embryonic in situ data for Syx6: 12 pix of staining in 5 body parts.
BioGrid reports that CG7736 interacts with CG9373 .
TRiP has 1 RNAi stocks for FBgn0037084 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037084 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain751 114 of 4 3.80Up
Head285 154 of 4 1.50Up
Eye437 124 of 4 2.22Up
Thoracicoabdominal ganglion749 104 of 4 3.80Up
Salivary gland482 304 of 4 2.45Up
Crop113 44 of 4 0.60Down
Midgut466 114 of 4 2.40Up
Tubule263 64 of 4 1.30Up
Hindgut190 24 of 4 1.00None
Heart112 54 of 4 0.57Down
Fat body90 54 of 4 0.46Down
Ovary297 54 of 4 1.50Up
Testis145 64 of 4 0.70Down
Male accessory glands219 34 of 4 1.10Up
Virgin spermatheca153 44 of 4 0.78Down
Mated spermatheca174 54 of 4 0.89Down
Adult carcass104 14 of 4 0.50Down
Larval CNS283 144 of 4 1.44Up
Larval Salivary gland242 84 of 4 1.23Up
Larval midgut356 44 of 4 1.81Up
Larval tubule283 124 of 4 1.40Up
Larval hindgut175 84 of 4 0.89None
Larval fat body140 64 of 4 0.70Down
Larval trachea90 144 of 4 0.46Down
Larval carcass78 34 of 4 0.40Down
S2 cells (growing)78 34 of 4 0.40Down
Whole fly196 34 of 4

Looking for FBgn0037084. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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