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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037090 through 18771 annotations produced 1 hits



Esterase Q (Est-Q):

Annotation Number : CG7529
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037090
Gbrowse : chr3L:21494528-21497068 (+) // 100.0 //
Probeset : 1624895_at
Accessions : protein= NP_649321;, nucleotide= NM_141064;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0037090.
BDGP gene expression has embryonic in situ data for CG7529: 4 pix of staining in 1 body parts.
Homophila reports that CG7529 is a close match (1e-18) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
VDRC has 2 RNAi stocks for FBgn0037090 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 ± 84 of 4 0.90None
Head311 ± 524 of 4 3.00Up
Eye199 ± 184 of 4 1.95Up
Thoracicoabdominal ganglion74 ± 54 of 4 0.70Down
Salivary gland343 ± 154 of 4 3.36Up
Crop68 ± 44 of 4 0.70Down
Midgut1032 ± 324 of 410.10Up
Tubule1051 ± 564 of 410.30Up
Hindgut141 ± 54 of 4 1.40Up
Heart194 ± 164 of 4 1.90Up
Fat body251 ± 634 of 4 2.46Up
Ovary3 ± 00 of 4 0.00Down
Testis22 ± 14 of 4 0.20Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca365 ± 124 of 4 3.57Up
Mated spermatheca212 ± 444 of 4 2.08None
Adult carcass230 ± 124 of 4 2.30Up
Larval CNS25 ± 134 of 4 0.25Down
Larval Salivary gland4 ± 00 of 4 0.04Down
Larval midgut593 ± 584 of 4 5.81Up
Larval tubule133 ± 84 of 4 1.30Up
Larval hindgut38 ± 24 of 4 0.38Down
Larval fat body39 ± 34 of 4 0.40Down
Larval trachea35 ± 34 of 4 0.34Down
Larval carcass5 ± 21 of 4 0.06Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly102 ± 64 of 4

Looking for FBgn0037090. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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