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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037093 through 18771 annotations produced 1 hits



(CG7597):

Annotation Number : CG7597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037093
Gbrowse : chr3L:21509414-21515786 (+) // 100.0 //
Probeset : 1634492_s_at
Accessions : protein= NP_649325; /// NP_730643;, nucleotide= NM_141068; /// NM_168912;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0037093.
BDGP gene expression has embryonic in situ data for CG7597: 4 pix of staining in 1 body parts.
Homophila reports that CG7597 is a close match (4e-11) to human gene TYK2 (NP_003322), a gene associated with Protein-tyrosine kinase 2 deficiency, 611521 (3).
TRiP has 3 RNAi stocks for FBgn0037093 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037093 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain167 ± 54 of 4 1.70Up
Head101 ± 104 of 4 1.00None
Eye34 ± 24 of 4 0.35Down
Thoracicoabdominal ganglion127 ± 64 of 4 1.30Up
Salivary gland107 ± 54 of 4 1.07None
Crop137 ± 104 of 4 1.40Up
Midgut83 ± 14 of 4 0.80None
Tubule88 ± 24 of 4 0.90Down
Hindgut78 ± 44 of 4 0.80Down
Heart64 ± 84 of 4 0.65Down
Fat body167 ± 194 of 4 1.66Up
Ovary311 ± 54 of 4 3.10Up
Testis12 ± 14 of 4 0.10Down
Male accessory glands148 ± 54 of 4 1.50Up
Virgin spermatheca157 ± 134 of 4 1.57Up
Mated spermatheca150 ± 94 of 4 1.49Up
Adult carcass71 ± 94 of 4 0.70Down
Larval CNS337 ± 414 of 4 3.35Up
Larval Salivary gland201 ± 94 of 4 2.00Up
Larval midgut83 ± 44 of 4 0.83None
Larval tubule152 ± 44 of 4 1.50Up
Larval hindgut148 ± 104 of 4 1.48Up
Larval fat body147 ± 104 of 4 1.50Up
Larval trachea88 ± 34 of 4 0.88None
Larval carcass138 ± 104 of 4 1.37Up
S2 cells (growing)124 ± 54 of 4 1.24Up
Whole fly100 ± 64 of 4

Looking for FBgn0037093. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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