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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037094 through 18771 annotations produced 1 hits



(CG7611):

Annotation Number : CG7611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037094
Gbrowse : chr3L:21516277-21521266 (+) // 100.0 //
Probeset : 1623225_s_at
Accessions : protein= NP_001163489; /// NP_649326; /// NP_730644; /// NP_730645; /// NP_730646; /// NP_730647; /// NP_730648; /// NP_730649; /// NP_730650;, nucleotide= NM_001170018; /// NM_141069; /// NM_168913; /// NM_168914; /// NM_168915; /// NM_168916; /// NM_168917; /// NM_168918; /// NM_168919;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electr
FlyMine data for FBgn0037094.
BDGP gene expression has embryonic in situ data for CG7611: 7 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain373 24 of 4 0.90Down
Head374 64 of 4 0.90Down
Eye299 134 of 4 0.68Down
Thoracicoabdominal ganglion381 84 of 4 0.90Down
Salivary gland653 114 of 4 1.49Up
Crop579 254 of 4 1.30Up
Midgut1094 124 of 4 2.50Up
Tubule606 284 of 4 1.40Up
Hindgut631 94 of 4 1.40Up
Heart560 194 of 4 1.28Up
Fat body818 184 of 4 1.87Up
Ovary546 54 of 4 1.20Up
Testis114 44 of 4 0.30Down
Male accessory glands457 104 of 4 1.00None
Virgin spermatheca1024 594 of 4 2.34Up
Mated spermatheca878 674 of 4 2.01Up
Adult carcass605 234 of 4 1.40Up
Larval CNS525 464 of 4 1.20Up
Larval Salivary gland606 124 of 4 1.38Up
Larval midgut1270 1424 of 4 2.90Up
Larval tubule1195 324 of 4 2.70Up
Larval hindgut725 744 of 4 1.66Up
Larval fat body988 834 of 4 2.30Up
Larval trachea452 194 of 4 1.03None
Larval carcass688 694 of 4 1.57Up
S2 cells (growing)468 54 of 4 1.07None
Whole fly437 124 of 4

Looking for FBgn0037094. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime