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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037098 through 18771 annotations produced 1 hits



(Wnk):

Annotation Number : CG7177
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037098
Gbrowse : chr3L:21537059-21547994 (-) // 100.0 //
Probeset : 1635378_at
Accessions : protein= NP_649329;, nucleotide= NM_141072;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase
FlyMine data for FBgn0037098.
Homophila reports that CG7177 is a close match (6e-74) to human gene PHA2B;PRKWNK4;WNK4 (NP_115763), a gene associated with Pseudohypoaldosteronism type II, 145260 (3).
BioGrid reports that CG7177 interacts with CG8368 .
TRiP has 1 RNAi stocks for FBgn0037098 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037098 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 ± 34 of 4 2.20Up
Head114 ± 94 of 4 1.20None
Eye84 ± 64 of 4 0.87None
Thoracicoabdominal ganglion190 ± 54 of 4 2.00Up
Salivary gland206 ± 124 of 4 2.12Up
Crop139 ± 54 of 4 1.40Up
Midgut141 ± 74 of 4 1.50Up
Tubule124 ± 14 of 4 1.30Up
Hindgut138 ± 14 of 4 1.40Up
Heart81 ± 24 of 4 0.84Down
Fat body104 ± 74 of 4 1.07None
Ovary216 ± 74 of 4 2.20Up
Testis140 ± 44 of 4 1.40Up
Male accessory glands129 ± 94 of 4 1.30Up
Virgin spermatheca66 ± 24 of 4 0.68Down
Mated spermatheca68 ± 24 of 4 0.70Down
Adult carcass129 ± 64 of 4 1.30Up
Larval CNS146 ± 44 of 4 1.51Up
Larval Salivary gland119 ± 74 of 4 1.23Up
Larval midgut175 ± 134 of 4 1.81Up
Larval tubule213 ± 34 of 4 2.20Up
Larval hindgut169 ± 24 of 4 1.75Up
Larval fat body110 ± 124 of 4 1.10None
Larval trachea89 ± 74 of 4 0.92None
Larval carcass129 ± 94 of 4 1.33Up
S2 cells (growing)115 ± 04 of 4 1.20Up
Whole fly97 ± 24 of 4

Looking for FBgn0037098. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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