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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037100 through 18771 annotations produced 1 hits



capa receptor (capaR):

Annotation Number : CG14575
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037100
Gbrowse : chr3L:21551360-21555100 (-) // 100.0 //
Probeset : 1635890_at
Accessions : protein= NP_996140;, nucleotide= NM_206418;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
Interpro : "0001607 // neuromedin U receptor activity // inferred from electronic annotation /// 0004871 // signal transducer activ
FlyMine data for FBgn0037100.
Homophila reports that CG14575 is a close match (9e-12) to human gene BCP;CBT;OPN1SW (NP_001699), a gene associated with Colorblindness, tritan (3).
TRiP has 1 RNAi stocks for FBgn0037100 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037100 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 1.20None
Head8 ± 03 of 4 0.70Down
Eye4 ± 11 of 4 0.34Down
Thoracicoabdominal ganglion14 ± 04 of 4 1.20None
Salivary gland23 ± 33 of 4 1.91Up
Crop8 ± 13 of 4 0.70None
Midgut15 ± 14 of 4 1.20None
Tubule512 ± 674 of 442.00Up
Hindgut16 ± 14 of 4 1.40None
Heart7 ± 22 of 4 0.59None
Fat body15 ± 44 of 4 1.30None
Ovary5 ± 01 of 4 0.40Down
Testis5 ± 02 of 4 0.50Down
Male accessory glands8 ± 20 of 4 0.70None
Virgin spermatheca8 ± 23 of 4 0.73None
Mated spermatheca11 ± 24 of 4 0.96None
Adult carcass19 ± 14 of 4 1.60Up
Larval CNS9 ± 24 of 4 0.74None
Larval Salivary gland5 ± 10 of 4 0.44Down
Larval midgut16 ± 12 of 4 1.35None
Larval tubule176 ± 74 of 414.40Up
Larval hindgut10 ± 14 of 4 0.83None
Larval fat body6 ± 11 of 4 0.50Down
Larval trachea5 ± 10 of 4 0.42Down
Larval carcass6 ± 12 of 4 0.51Down
S2 cells (growing)6 ± 13 of 4 0.55Down
Whole fly12 ± 14 of 4

Looking for FBgn0037100. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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