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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037102 through 18771 annotations produced 1 hits



(CG7172):

Annotation Number : CG7172
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037102
Gbrowse : chr3L:21561234-21561988 (-) // 100.0 //
Probeset : 1635634_at
Accessions : protein= NP_649333;, nucleotide= NM_141076;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037102.
BioGrid reports that CG7172 interacts with CG9820 CG9541 .
VDRC has 2 RNAi stocks for FBgn0037102 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain243 ± 14 of 4 1.30Up
Head197 ± 154 of 4 1.10None
Eye183 ± 54 of 4 0.99None
Thoracicoabdominal ganglion267 ± 84 of 4 1.40Up
Salivary gland181 ± 84 of 4 0.97None
Crop168 ± 34 of 4 0.90None
Midgut297 ± 94 of 4 1.60Up
Tubule126 ± 34 of 4 0.70Down
Hindgut275 ± 74 of 4 1.50Up
Heart129 ± 64 of 4 0.70Down
Fat body168 ± 264 of 4 0.90None
Ovary313 ± 54 of 4 1.70Up
Testis106 ± 44 of 4 0.60Down
Male accessory glands167 ± 44 of 4 0.90None
Virgin spermatheca79 ± 04 of 4 0.43Down
Mated spermatheca77 ± 34 of 4 0.42Down
Adult carcass128 ± 94 of 4 0.70Down
Larval CNS246 ± 164 of 4 1.32Up
Larval Salivary gland258 ± 134 of 4 1.39Up
Larval midgut194 ± 104 of 4 1.05None
Larval tubule181 ± 34 of 4 1.00None
Larval hindgut245 ± 134 of 4 1.32Up
Larval fat body156 ± 84 of 4 0.80None
Larval trachea185 ± 334 of 4 1.00None
Larval carcass233 ± 204 of 4 1.26None
S2 cells (growing)184 ± 44 of 4 0.99None
Whole fly185 ± 164 of 4

Looking for FBgn0037102. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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