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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037106 through 18771 annotations produced 1 hits



chr3L:21611453-21612973 (+) // 98.3 // ():

Annotation Number : CG11307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625592_s_at
Accessions : protein= , nucleotide= NP_001163490; /// NP_649338; /// NP_730667;
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 ± 24 of 4 0.90None
Head42 ± 14 of 4 0.40Down
Eye71 ± 34 of 4 0.73Down
Thoracicoabdominal ganglion69 ± 04 of 4 0.70Down
Salivary gland39 ± 23 of 4 0.40Down
Crop48 ± 34 of 4 0.50Down
Midgut38 ± 14 of 4 0.40Down
Tubule32 ± 14 of 4 0.30Down
Hindgut75 ± 14 of 4 0.80None
Heart39 ± 04 of 4 0.40Down
Fat body41 ± 64 of 4 0.42Down
Ovary296 ± 44 of 4 3.00Up
Testis22 ± 14 of 4 0.20Down
Male accessory glands37 ± 54 of 4 0.40Down
Virgin spermatheca34 ± 24 of 4 0.36Down
Mated spermatheca35 ± 24 of 4 0.36Down
Adult carcass40 ± 44 of 4 0.40Down
Larval CNS172 ± 44 of 4 1.76Up
Larval Salivary gland40 ± 14 of 4 0.41Down
Larval midgut45 ± 14 of 4 0.46Down
Larval tubule47 ± 34 of 4 0.50Down
Larval hindgut133 ± 14 of 4 1.36Up
Larval fat body43 ± 34 of 4 0.40Down
Larval trachea68 ± 64 of 4 0.69Down
Larval carcass50 ± 14 of 4 0.51Down
S2 cells (growing)56 ± 24 of 4 0.58Down
Whole fly98 ± 74 of 4

Looking for FBgn0037106. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime