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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037107 through 18771 annotations produced 1 hits


Annotation Number : CG7166
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037107
Gbrowse : chr3L:21614973-21616648 (-) // 98.18 //
Probeset : 1632657_at
Accessions : protein= NP_649339;, nucleotide= NM_141082;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity
FlyMine data for FBgn0037107.
Homophila reports that CG7166 is a close match (4e-11) to human gene CAML1;HSAS1;L1CAM (NP_076493), a gene associated with Corpus callosum, partial agenesis of, 304100 (3);CRASH syndrome, 303350 (3);Hydrocephalus due to aqueductal stenosis, 307000 (3);Hydrocephalus with congenital idiopathic intestinal pseudoobstruction, 307000 (3);Hydrocephalus with Hirschsprung disease and cleft palate, 142623 (3);MASA syndrome, 303350 (3).
VDRC has 3 RNAi stocks for FBgn0037107 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 74 of 410.40Up
Head40 104 of 4 3.30None
Eye23 14 of 4 1.89Up
Thoracicoabdominal ganglion44 104 of 4 3.70None
Salivary gland18 51 of 4 1.50None
Crop3 00 of 4 0.30Down
Midgut5 10 of 4 0.40Down
Tubule2 00 of 4 0.20Down
Hindgut5 01 of 4 0.50Down
Heart0 00 of 4 0.03Down
Fat body8 12 of 4 0.72Down
Ovary2 00 of 4 0.20Down
Testis102 124 of 4 8.40Up
Male accessory glands7 11 of 4 0.60None
Virgin spermatheca2 00 of 4 0.16Down
Mated spermatheca6 11 of 4 0.51Down
Adult carcass10 21 of 4 0.80None
Larval CNS32 24 of 4 2.68Up
Larval Salivary gland3 21 of 4 0.30Down
Larval midgut5 10 of 4 0.46Down
Larval tubule3 10 of 4 0.30Down
Larval hindgut3 00 of 4 0.29Down
Larval fat body8 41 of 4 0.70None
Larval trachea3 10 of 4 0.25Down
Larval carcass1 00 of 4 0.11Down
S2 cells (growing)2 00 of 4 0.20Down
Whole fly12 03 of 4

Looking for FBgn0037107. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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