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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037108 through 18771 annotations produced 1 hits



chr3L:21619378-21621422 (+) // 100.0 // ("putative alpha-1):

Annotation Number : CG11306
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640824_at
Accessions : protein= EC:2.4.1.-, nucleotide=
Interpro : 0009058 // biosynthetic process // inferred from electronic annotation
Homophila reports that CG11306 is a close match (4e-15) to human gene ALG2;CDGII (NP_149078), a gene associated with Congenital disorder of glycosylation, type Ii, 607906 (3).
BioGrid reports that CG11306 interacts with CG32096 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain363 ± 44 of 4 1.60Up
Head358 ± 124 of 4 1.60Up
Eye624 ± 224 of 4 2.77Up
Thoracicoabdominal ganglion380 ± 124 of 4 1.70Up
Salivary gland1920 ± 374 of 4 8.52Up
Crop243 ± 94 of 4 1.10None
Midgut498 ± 54 of 4 2.20Up
Tubule382 ± 134 of 4 1.70Up
Hindgut261 ± 74 of 4 1.20Up
Heart399 ± 104 of 4 1.77Up
Fat body353 ± 444 of 4 1.57Up
Ovary293 ± 104 of 4 1.30Up
Testis94 ± 44 of 4 0.40Down
Male accessory glands1106 ± 184 of 4 4.90Up
Virgin spermatheca532 ± 124 of 4 2.36Up
Mated spermatheca547 ± 194 of 4 2.43Up
Adult carcass242 ± 124 of 4 1.10None
Larval CNS376 ± 24 of 4 1.67Up
Larval Salivary gland907 ± 294 of 4 4.03Up
Larval midgut411 ± 134 of 4 1.83Up
Larval tubule463 ± 164 of 4 2.10Up
Larval hindgut299 ± 104 of 4 1.33Up
Larval fat body502 ± 564 of 4 2.20Up
Larval trachea502 ± 284 of 4 2.23Up
Larval carcass293 ± 104 of 4 1.30Up
S2 cells (growing)690 ± 54 of 4 3.06Up
Whole fly225 ± 84 of 4

Looking for FBgn0037108. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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