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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037110 through 18771 annotations produced 1 hits



ORMDL (ORMDL):

Annotation Number : CG14577
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037110
Gbrowse : chr3L:21628484-21629222 (+) // 100.0 //
Probeset : 1630754_at
Accessions : protein= NP_730669;, nucleotide= NM_168929;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037110.
BioGrid reports that CG14577 interacts with CG8151 .
VDRC has 3 RNAi stocks for FBgn0037110 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain154 ± 34 of 4 0.80Down
Head203 ± 74 of 4 1.00None
Eye166 ± 94 of 4 0.85None
Thoracicoabdominal ganglion126 ± 74 of 4 0.60Down
Salivary gland1135 ± 154 of 4 5.81Up
Crop739 ± 84 of 4 3.80Up
Midgut561 ± 254 of 4 2.90Up
Tubule228 ± 54 of 4 1.20Up
Hindgut378 ± 114 of 4 1.90Up
Heart341 ± 154 of 4 1.75Up
Fat body351 ± 394 of 4 1.80Up
Ovary231 ± 34 of 4 1.20Up
Testis59 ± 34 of 4 0.30Down
Male accessory glands433 ± 84 of 4 2.20Up
Virgin spermatheca215 ± 94 of 4 1.10None
Mated spermatheca187 ± 114 of 4 0.96None
Adult carcass313 ± 104 of 4 1.60Up
Larval CNS105 ± 104 of 4 0.54Down
Larval Salivary gland326 ± 124 of 4 1.67Up
Larval midgut419 ± 114 of 4 2.14Up
Larval tubule327 ± 124 of 4 1.70Up
Larval hindgut173 ± 14 of 4 0.89Down
Larval fat body343 ± 374 of 4 1.80Up
Larval trachea166 ± 44 of 4 0.85Down
Larval carcass132 ± 74 of 4 0.68Down
S2 cells (growing)198 ± 14 of 4 1.01None
Whole fly195 ± 64 of 4

Looking for FBgn0037110. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime