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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037114 through 18771 annotations produced 1 hits

CG7160 (Cpr78E):

Annotation Number : CG7160
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037114
Gbrowse : chr3L:21659553-21660080 (-) // 100.0 //
Probeset : 1638017_at
Accessions : protein= NP_649345;, nucleotide= NM_141088;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0037114.
BDGP gene expression has embryonic in situ data for CG7160: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037114 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.50None
Head6 20 of 4 1.00None
Eye12 43 of 4 1.89None
Thoracicoabdominal ganglion7 21 of 4 1.10None
Salivary gland12 20 of 4 1.84None
Crop179 24 of 427.10Up
Midgut36 24 of 4 5.60Up
Tubule9 10 of 4 1.50None
Hindgut45 24 of 4 6.80Up
Heart46 24 of 4 7.07Up
Fat body8 10 of 4 1.25None
Ovary4 10 of 4 0.60None
Testis8 11 of 4 1.30None
Male accessory glands28 24 of 4 4.30Up
Virgin spermatheca1 00 of 4 0.17None
Mated spermatheca2 00 of 4 0.33None
Adult carcass20 32 of 4 3.10Up
Larval CNS30 44 of 4 4.56Up
Larval Salivary gland3 10 of 4 0.48None
Larval midgut20 12 of 4 3.02Up
Larval tubule4 10 of 4 0.60None
Larval hindgut261 734 of 439.46Up
Larval fat body6 21 of 4 1.00None
Larval trachea1320 5924 of 4199.38Up
Larval carcass4948 4794 of 4746.94Up
S2 cells (growing)2 00 of 4 0.34None
Whole fly6 10 of 4

Looking for FBgn0037114. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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