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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037115 through 18771 annotations produced 1 hits


(CG11249):

Annotation Number : CG11249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037115
Gbrowse : chr3L:21665238-21667618 (+) // 100.0 //
Probeset : 1628970_at
Accessions : protein= NP_649346;, nucleotide= NM_141089;
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004743 // pyruvate kinase activity // infer
FlyMine data for FBgn0037115.
BioGrid reports that CG11249 interacts with CG18042 CG3942 CG11380 CG1391 .
VDRC has 2 RNAi stocks for FBgn0037115 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.06Down
Crop10 ± 20 of 4 0.30Down
Midgut3 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart5 ± 00 of 4 0.18Down
Fat body5 ± 30 of 4 0.17Down
Ovary2 ± 10 of 4 0.10Down
Testis387 ± 194 of 411.90Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.16Down
Mated spermatheca2 ± 10 of 4 0.08Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.10Down
Larval midgut4 ± 10 of 4 0.14Down
Larval tubule7 ± 20 of 4 0.20Down
Larval hindgut5 ± 10 of 4 0.17Down
Larval fat body44 ± 191 of 4 1.40None
Larval trachea5 ± 31 of 4 0.17Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly32 ± 23 of 4

Looking for FBgn0037115. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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