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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037117 through 18771 annotations produced 1 hits



(CG11248):

Annotation Number : CG11248
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037117
Gbrowse : chr3L:21673185-21676331 (+) // 100.0 //
Probeset : 1638930_s_at
Accessions : protein= NP_649348; /// NP_730678;, nucleotide= NM_141091; /// NM_168934;
FlyMine data for FBgn0037117.
BDGP gene expression has embryonic in situ data for CG11248: 11 pix of staining in 7 body parts.
BioGrid reports that CG11248 interacts with CG8274 CG1137 CG12200 CG12679 CG13476 CG15011 CG15781 CG1591 CG18362 CG30428 CG31475 CG3193 CG5062 CG8065 CG8086 CG8107 CG8597 CG8851 CG8965 CG9573 CG9911 .
VDRC has 2 RNAi stocks for FBgn0037117 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain176 ± 54 of 4 2.70Up
Head61 ± 54 of 4 0.90None
Eye55 ± 44 of 4 0.84None
Thoracicoabdominal ganglion173 ± 64 of 4 2.60Up
Salivary gland85 ± 44 of 4 1.30Up
Crop50 ± 44 of 4 0.80Down
Midgut43 ± 34 of 4 0.70Down
Tubule73 ± 04 of 4 1.10Up
Hindgut42 ± 34 of 4 0.70Down
Heart37 ± 24 of 4 0.56Down
Fat body42 ± 74 of 4 0.65Down
Ovary111 ± 14 of 4 1.70Up
Testis196 ± 84 of 4 3.00Up
Male accessory glands51 ± 64 of 4 0.80None
Virgin spermatheca58 ± 34 of 4 0.88None
Mated spermatheca56 ± 44 of 4 0.86None
Adult carcass47 ± 14 of 4 0.70Down
Larval CNS98 ± 94 of 4 1.50Up
Larval Salivary gland68 ± 54 of 4 1.04None
Larval midgut49 ± 24 of 4 0.74Down
Larval tubule89 ± 24 of 4 1.40Up
Larval hindgut41 ± 44 of 4 0.63Down
Larval fat body75 ± 134 of 4 1.10None
Larval trachea33 ± 14 of 4 0.51Down
Larval carcass54 ± 54 of 4 0.83None
S2 cells (growing)59 ± 04 of 4 0.91None
Whole fly65 ± 24 of 4

Looking for FBgn0037117. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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