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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037124 through 18771 annotations produced 1 hits



(CG14568):

Annotation Number : CG14568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037124
Gbrowse : chr3L:21725908-21726584 (-) // 100.0 //
Probeset : 1636390_at
Accessions : protein= NP_649355;, nucleotide= NM_141098;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037124.
BDGP gene expression has embryonic in situ data for CG14568: 4 pix of staining in 1 body parts.
BioGrid reports that CG14568 interacts with CG30463 CG32654 CG5618 .
VDRC has 2 RNAi stocks for FBgn0037124 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20None
Head9 10 of 4 0.50None
Eye1 00 of 4 0.08Down
Thoracicoabdominal ganglion9 20 of 4 0.50None
Salivary gland21 20 of 4 1.12None
Crop10 20 of 4 0.50None
Midgut9 30 of 4 0.50None
Tubule7 10 of 4 0.40Down
Hindgut13 11 of 4 0.70None
Heart3 10 of 4 0.20Down
Fat body11 40 of 4 0.63None
Ovary6 00 of 4 0.30None
Testis11 13 of 4 0.60None
Male accessory glands5 10 of 4 0.30None
Virgin spermatheca11 11 of 4 0.63None
Mated spermatheca10 21 of 4 0.54None
Adult carcass19 32 of 4 1.00None
Larval CNS6 31 of 4 0.32None
Larval Salivary gland12 40 of 4 0.68None
Larval midgut12 10 of 4 0.67None
Larval tubule10 11 of 4 0.50None
Larval hindgut11 01 of 4 0.64None
Larval fat body14 10 of 4 0.80None
Larval trachea8 42 of 4 0.44None
Larval carcass11 21 of 4 0.62None
S2 cells (growing)6 10 of 4 0.33None
Whole fly18 42 of 4

Looking for FBgn0037124. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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