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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037125 through 18771 annotations produced 1 hits



(CG14573):

Annotation Number : CG14573
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037125
Gbrowse : chr3L:21727230-21727809 (+) // 100.0 //
Probeset : 1626692_at
Accessions : protein= NP_649356;, nucleotide= NM_141099;
FlyMine data for FBgn0037125.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10None
Head4 ± 10 of 4 0.50None
Eye1 ± 10 of 4 0.22None
Thoracicoabdominal ganglion1 ± 00 of 4 0.20None
Salivary gland2 ± 00 of 4 0.30None
Crop1 ± 00 of 4 0.10None
Midgut2 ± 00 of 4 0.30None
Tubule1 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10None
Heart1 ± 00 of 4 0.17None
Fat body4 ± 20 of 4 0.49None
Ovary0 ± 00 of 4 0.10None
Testis0 ± 00 of 4 0.10None
Male accessory glands2 ± 00 of 4 0.20None
Virgin spermatheca2 ± 00 of 4 0.22None
Mated spermatheca1 ± 00 of 4 0.20None
Adult carcass2 ± 00 of 4 0.30None
Larval CNS0 ± 00 of 4 0.09None
Larval Salivary gland1 ± 00 of 4 0.12None
Larval midgut2 ± 00 of 4 0.30None
Larval tubule5 ± 10 of 4 0.70None
Larval hindgut0 ± 00 of 4 0.08None
Larval fat body2 ± 00 of 4 0.20None
Larval trachea27 ± 84 of 4 3.14Up
Larval carcass1 ± 00 of 4 0.15None
S2 cells (growing)1 ± 00 of 4 0.13None
Whole fly8 ± 40 of 4

Looking for FBgn0037125. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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