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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037135 through 18771 annotations produced 1 hits



(CG7414):

Annotation Number : CG7414
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037135
Gbrowse : chr3L:21817918-21820958 (+) // 100.0 //
Probeset : 1635907_at
Accessions : protein= NP_001137996; /// NP_649365;, nucleotide= NM_001144524; /// NM_141108;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005850 // eukaryotic translation initiation
Interpro : 0000049 // tRNA binding // inferred from sequence or structural similarity /// 0003743 // translation initiation factor
FlyMine data for FBgn0037135.
BDGP gene expression has embryonic in situ data for CG7414: 4 pix of staining in 1 body parts.
BioGrid reports that CG7414 interacts with CG9173 .
VDRC has 2 RNAi stocks for FBgn0037135 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain704 ± 154 of 4 0.70Down
Head998 ± 444 of 4 1.00None
Eye1259 ± 484 of 4 1.25None
Thoracicoabdominal ganglion672 ± 154 of 4 0.70Down
Salivary gland2291 ± 564 of 4 2.27Up
Crop1305 ± 284 of 4 1.30Up
Midgut546 ± 294 of 4 0.50Down
Tubule623 ± 114 of 4 0.60Down
Hindgut1075 ± 404 of 4 1.10None
Heart1460 ± 484 of 4 1.45Up
Fat body1440 ± 2104 of 4 1.43Up
Ovary856 ± 94 of 4 0.80None
Testis1637 ± 694 of 4 1.60Up
Male accessory glands2144 ± 1764 of 4 2.10Up
Virgin spermatheca611 ± 694 of 4 0.61Down
Mated spermatheca565 ± 654 of 4 0.56Down
Adult carcass1152 ± 694 of 4 1.10None
Larval CNS989 ± 684 of 4 0.98None
Larval Salivary gland1555 ± 634 of 4 1.54Up
Larval midgut710 ± 334 of 4 0.70Down
Larval tubule576 ± 124 of 4 0.60Down
Larval hindgut1027 ± 504 of 4 1.02None
Larval fat body1396 ± 694 of 4 1.40Up
Larval trachea2324 ± 2074 of 4 2.30Up
Larval carcass1183 ± 674 of 4 1.17None
S2 cells (growing)1768 ± 504 of 4 1.75Up
Whole fly1008 ± 834 of 4

Looking for FBgn0037135. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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