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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037139 through 18771 annotations produced 1 hits



(CG14563):

Annotation Number : CG14563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037139
Gbrowse : chr3L:21835006-21835455 (-) // 100.0 //
Probeset : 1637434_at
Accessions : protein= NP_649369;, nucleotide= NM_141112;
FlyMine data for FBgn0037139.
BioGrid reports that CG14563 interacts with CG4220 CG7697 CG9192 CG33528 .
TRiP has 1 RNAi stocks for FBgn0037139 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037139 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.60None
Head1 ± 00 of 4 0.80None
Eye2 ± 10 of 4 0.85None
Thoracicoabdominal ganglion3 ± 00 of 4 1.40None
Salivary gland5 ± 10 of 4 2.08None
Crop1 ± 00 of 4 0.70None
Midgut3 ± 00 of 4 1.40None
Tubule1 ± 00 of 4 0.70Down
Hindgut2 ± 00 of 4 0.90None
Heart2 ± 10 of 4 1.04None
Fat body3 ± 30 of 4 1.43None
Ovary1 ± 00 of 4 0.50None
Testis2 ± 10 of 4 1.10None
Male accessory glands3 ± 20 of 4 1.50None
Virgin spermatheca1 ± 00 of 4 0.75None
Mated spermatheca1 ± 00 of 4 0.51None
Adult carcass2 ± 00 of 4 1.00None
Larval CNS1 ± 10 of 4 0.81None
Larval Salivary gland1 ± 00 of 4 0.64None
Larval midgut2 ± 00 of 4 1.04None
Larval tubule2 ± 10 of 4 1.00None
Larval hindgut2 ± 00 of 4 0.85None
Larval fat body10 ± 40 of 4 4.20None
Larval trachea1 ± 00 of 4 0.56None
Larval carcass2 ± 00 of 4 1.01None
S2 cells (growing)2 ± 00 of 4 0.87None
Whole fly2 ± 00 of 4

Looking for FBgn0037139. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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