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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037141 through 18771 annotations produced 1 hits

DNApol-eta (DNApol-eta):

Annotation Number : CG7143
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037141
Gbrowse : chr3L:21931722-21934882 (-) // 100.0 //
Probeset : 1626494_at
Accessions : protein= NP_649371;, nucleotide= NM_141114;
Interpro : 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activit
FlyMine data for FBgn0037141.
Homophila reports that CG7143 is a close match (7e-86) to human gene POLH;XPV (NP_006493), a gene associated with Xeroderma pigmentosum, variant type, 278750 (3).
TRiP has 1 RNAi stocks for FBgn0037141 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037141 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 34 of 4 0.40Down
Head21 14 of 4 0.20Down
Eye20 04 of 4 0.14Down
Thoracicoabdominal ganglion39 24 of 4 0.30Down
Salivary gland44 53 of 4 0.32Down
Crop24 24 of 4 0.20Down
Midgut13 24 of 4 0.10Down
Tubule36 34 of 4 0.30Down
Hindgut24 14 of 4 0.20Down
Heart15 14 of 4 0.11Down
Fat body35 144 of 4 0.25Down
Ovary291 94 of 4 2.10Up
Testis18 24 of 4 0.10Down
Male accessory glands30 24 of 4 0.20Down
Virgin spermatheca24 24 of 4 0.17Down
Mated spermatheca30 44 of 4 0.22Down
Adult carcass23 14 of 4 0.20Down
Larval CNS137 164 of 4 0.97None
Larval Salivary gland25 14 of 4 0.18Down
Larval midgut19 24 of 4 0.13Down
Larval tubule23 34 of 4 0.20Down
Larval hindgut29 14 of 4 0.21Down
Larval fat body14 02 of 4 0.10Down
Larval trachea80 84 of 4 0.56Down
Larval carcass32 14 of 4 0.23Down
S2 cells (growing)116 34 of 4 0.82None
Whole fly142 134 of 4

Looking for FBgn0037141. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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