Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037143 through 18771 annotations produced 2 hits



(CG7448):

Annotation Number : S.C3L002796
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037143
Gbrowse : chr3L:21944293-21944612 (+) // 100.0 //
Probeset : 1638281_at
Accessions : protein= NP_649373; /// NP_996146;, nucleotide= NM_141116; /// NM_206424;
Interpro : 0008513 // secondary active organic cation transmembrane transporter activity // inferred from sequence or structural si
FlyMine data for FBgn0037143.
BDGP gene expression has embryonic in situ data for CG7448: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0037143 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037143 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 10 of 4 0.80None
Head12 20 of 4 0.90None
Eye8 11 of 4 0.67None
Thoracicoabdominal ganglion17 12 of 4 1.40None
Salivary gland41 70 of 4 3.18Up
Crop16 12 of 4 1.30None
Midgut35 54 of 4 2.80Up
Tubule17 02 of 4 1.40Up
Hindgut18 10 of 4 1.40None
Heart6 00 of 4 0.54None
Fat body27 42 of 4 2.16Up
Ovary10 11 of 4 0.80None
Testis14 13 of 4 1.10None
Male accessory glands36 00 of 4 2.80Up
Virgin spermatheca12 11 of 4 0.96None
Mated spermatheca19 21 of 4 1.53None
Adult carcass32 61 of 4 2.50None
Larval CNS13 22 of 4 1.06None
Larval Salivary gland21 31 of 4 1.68None
Larval midgut32 74 of 4 2.50None
Larval tubule34 14 of 4 2.70Up
Larval hindgut22 20 of 4 1.74None
Larval fat body26 52 of 4 2.10None
Larval trachea9 32 of 4 0.70None
Larval carcass24 11 of 4 1.90Up
S2 cells (growing)15 10 of 4 1.17None
Whole fly12 31 of 4



(CG7448):

Annotation Number : CG7448
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037143
Gbrowse : chr3L:21942924-21943951 (+) // 100.0 //
Probeset : 1632534_at
Accessions : protein= NP_649373; /// NP_996146;, nucleotide= NM_141116; /// NM_206424;
Interpro : 0008513 // secondary active organic cation transmembrane transporter activity // inferred from sequence or structural si
FlyMine data for FBgn0037143.
BDGP gene expression has embryonic in situ data for CG7448: 4 pix of staining in 1 body parts.
Homophila reports that CG7448 is a close match (4e-13) to human gene OCTN1;SLC22A4 (NP_003050), a gene associated with {Crohn disease, susceptibility to}, 266600 (3);{Rheumatoid arthritis, susceptibility to}, 180300 (3).
TRiP has 1 RNAi stocks for FBgn0037143 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037143 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head1 00 of 4 0.20Down
Eye3 10 of 4 0.49None
Thoracicoabdominal ganglion4 11 of 4 0.70None
Salivary gland4 10 of 4 0.75None
Crop2 00 of 4 0.30None
Midgut1 00 of 4 0.30Down
Tubule1 00 of 4 0.20Down
Hindgut1 00 of 4 0.20Down
Heart1 10 of 4 0.26Down
Fat body6 40 of 4 0.92None
Ovary1 00 of 4 0.30Down
Testis54 34 of 4 8.50Up
Male accessory glands4 30 of 4 0.70None
Virgin spermatheca2 00 of 4 0.42None
Mated spermatheca3 10 of 4 0.46None
Adult carcass2 00 of 4 0.40None
Larval CNS2 10 of 4 0.36None
Larval Salivary gland1 00 of 4 0.15Down
Larval midgut0 00 of 4 0.13Down
Larval tubule3 10 of 4 0.60None
Larval hindgut2 00 of 4 0.37None
Larval fat body10 51 of 4 1.60None
Larval trachea0 00 of 4 0.10Down
Larval carcass1 00 of 4 0.17Down
S2 cells (growing)1 00 of 4 0.26Down
Whole fly6 10 of 4

Looking for FBgn0037143. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime