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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037146 through 18771 annotations produced 1 hits



glutamate 5-kinase (CG7470):

Annotation Number : CG7470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037146
Gbrowse : chr3L:21965125-21975893 (+) // 100.0 //
Probeset : 1637154_at
Accessions : protein= NP_649375;, nucleotide= NM_141118;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004349 // glutamate 5-kinase activity // infer
FlyMine data for FBgn0037146.
BDGP gene expression has embryonic in situ data for CG7470: 16 pix of staining in 4 body parts.
Homophila reports that CG7470 is a close match (0) to human gene PYCS;GSAS (NP_002851), a gene associated with Hyperammonemia with hypoornithinemia, hypocitrullinemia, hypoargininemia, and hypoprolinemia (3).
BioGrid reports that CG7470 interacts with CG8942 .
VDRC has 3 RNAi stocks for FBgn0037146 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 ± 54 of 4 0.10Down
Head1037 ± 304 of 4 2.10Up
Eye587 ± 484 of 4 1.21None
Thoracicoabdominal ganglion61 ± 24 of 4 0.10Down
Salivary gland8 ± 40 of 4 0.02Down
Crop41 ± 21 of 4 0.10Down
Midgut1592 ± 404 of 4 3.30Up
Tubule1361 ± 324 of 4 2.80Up
Hindgut346 ± 224 of 4 0.70Down
Heart1517 ± 424 of 4 3.13Up
Fat body2484 ± 1264 of 4 5.13Up
Ovary0 ± 00 of 4 0.00Down
Testis16 ± 10 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2361 ± 1024 of 4 4.88Up
Mated spermatheca2344 ± 984 of 4 4.84Up
Adult carcass1253 ± 444 of 4 2.60Up
Larval CNS3 ± 20 of 4 0.01Down
Larval Salivary gland67 ± 74 of 4 0.14Down
Larval midgut991 ± 544 of 4 2.05Up
Larval tubule1180 ± 414 of 4 2.40Up
Larval hindgut369 ± 464 of 4 0.76None
Larval fat body2018 ± 2294 of 4 4.20Up
Larval trachea46 ± 213 of 4 0.10Down
Larval carcass49 ± 31 of 4 0.10Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly484 ± 34 of 4

Looking for FBgn0037146. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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