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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037162 through 18771 annotations produced 1 hits


Annotation Number : CG11449
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037162
Gbrowse : chr3L:22447472-22449089 (+) // 100.0 //
Probeset : 1637426_at
Accessions : protein= NP_649390;, nucleotide= NM_141133;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037162.
BioGrid reports that CG11449 interacts with CG1487 CG14025 CG14472 CG17153 CG31365 CG5436 CG5711 CG5857 CG7867 CG8749 CG9233 CG9797 .
VDRC has 1 RNAi stocks for FBgn0037162 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.90None
Head3 00 of 4 0.90None
Eye1 00 of 4 0.40None
Thoracicoabdominal ganglion3 10 of 4 1.00None
Salivary gland8 20 of 4 2.27None
Crop2 10 of 4 0.50None
Midgut1 00 of 4 0.50None
Tubule4 00 of 4 1.20None
Hindgut3 10 of 4 1.00None
Heart1 00 of 4 0.37None
Fat body4 20 of 4 1.29None
Ovary1 00 of 4 0.30None
Testis1 00 of 4 0.50None
Male accessory glands5 20 of 4 1.50None
Virgin spermatheca5 10 of 4 1.56None
Mated spermatheca5 20 of 4 1.32None
Adult carcass8 20 of 4 2.20None
Larval CNS2 20 of 4 0.63None
Larval Salivary gland1 00 of 4 0.44None
Larval midgut3 10 of 4 1.03None
Larval tubule4 10 of 4 1.20None
Larval hindgut6 10 of 4 1.59None
Larval fat body4 20 of 4 1.20None
Larval trachea1 10 of 4 0.29None
Larval carcass1 00 of 4 0.47None
S2 cells (growing)5 10 of 4 1.40None
Whole fly3 00 of 4

Looking for FBgn0037162. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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