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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037164 through 18771 annotations produced 1 hits



(CG11438):

Annotation Number : CG11438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037164
Gbrowse : chr3L:22459931-22461178 (+) // 100.0 //
Probeset : 1631307_at
Accessions : protein= NP_649392;, nucleotide= NM_141135;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0037164.
BDGP gene expression has embryonic in situ data for CG11438: 13 pix of staining in 5 body parts.
BioGrid reports that CG11438 interacts with CG17085 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.20Down
Head78 ± 104 of 4 2.50Up
Eye72 ± 94 of 4 2.33Up
Thoracicoabdominal ganglion7 ± 11 of 4 0.20Down
Salivary gland28 ± 22 of 4 0.90None
Crop295 ± 64 of 4 9.50Up
Midgut14 ± 22 of 4 0.50Down
Tubule10 ± 01 of 4 0.40Down
Hindgut52 ± 34 of 4 1.70Up
Heart6 ± 20 of 4 0.22Down
Fat body10 ± 31 of 4 0.35Down
Ovary8 ± 01 of 4 0.30Down
Testis151 ± 64 of 4 4.90Up
Male accessory glands20 ± 24 of 4 0.70Down
Virgin spermatheca20 ± 24 of 4 0.65Down
Mated spermatheca22 ± 34 of 4 0.73None
Adult carcass77 ± 44 of 4 2.50Up
Larval CNS6 ± 21 of 4 0.21Down
Larval Salivary gland14 ± 10 of 4 0.47Down
Larval midgut13 ± 20 of 4 0.44Down
Larval tubule158 ± 204 of 4 5.10Up
Larval hindgut124 ± 44 of 4 4.01Up
Larval fat body16 ± 51 of 4 0.50None
Larval trachea33 ± 14 of 4 1.07None
Larval carcass66 ± 94 of 4 2.14Up
S2 cells (growing)4 ± 10 of 4 0.16Down
Whole fly31 ± 14 of 4

Looking for FBgn0037164. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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